Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq3 105 7e-18 seq6 87.8 2e-12 seq5 86.0 6e-12 seq2 86.0 6e-12 >seq1 Length=42234885 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | ||| ||||| | || || || ||||||||||| ||||| | || || Sbjct 37703223 AAACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 37703282 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || || ||||||||||| | ||||| | |||||||| ||||| || |||||| Sbjct 37703283 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGGATACCTTCT 37703342 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | || |||| || |||||||| | || Sbjct 37703343 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCGGAGGATTCCACCTCGAGTGTG 37703402 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || |||||||| ||||| ||||| |||||||| Sbjct 37703403 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 37703440 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || | ||| || | || ||||| | || ||||| || ||||| || |||||| Sbjct 37712881 CCACCCCTTAACCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCA 37712940 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || ||| || || ||||||||||||||| | ||||| | ||||||||| ||||| Sbjct 37712941 AGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGG 37713000 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| || || | | || | ||||| | | || || Sbjct 37713001 ATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACT 37713060 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||| ||||| ||||| || || || ||||| Sbjct 37713061 TCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCAT 37713107 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | | |||||| ||||| | |||||||| || || || |||||||| Sbjct 37702985 GCCACCTCGAAGCCTCAAAACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAATCCGC 37703044 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| |||||||| |||||| |||| || | ||||||||||| || Sbjct 37703045 AAGGGTTCTTCCATCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCGGGGGG 37703104 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| | || | ||| | | || | || || | ||||| Sbjct 37703105 AATACCCTCCTTATC-CTGAATCTTGGCTTTGACATTATCAATGGTATCTGAACTCTCCA 37703163 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | || || |||||||| || || || || |||||||| Sbjct 37703164 CCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 37703212 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||| ||||| ||||| | |||| || ||||| || ||||| Sbjct 37707434 GTGGATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGCTTACCC 37707493 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || | ||||| || || || || || || ||||| ||| | |||| ||| Sbjct 37707494 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCT-TGAATCTTTGCTTT 37707552 Query 139688 AGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || || |||||| || || ||||||| ||| | || ||||||||||| || Sbjct 37707553 CACGTTATCAATGGTGTCGGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTCAAAGT 37707612 Query 139747 TTTTACGAATATTTGCAT 139764 ||| |||||||| ||||| Sbjct 37707613 TTTCACGAATATCTGCAT 37707630 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || ||||| | ||||| || || || ||||||||||| | || | | || Sbjct 37706734 CAACACCAAGTGCAGAGTAGATTCCTTCTGGATGTTATAATCAGCAAGGGTTCGCCCATC 37706793 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| ||||| || |||||| |||| || | |||||| || || || || || |||||||| Sbjct 37706794 TTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGAATCCCCTCTTTGTC 37706853 Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | |||| |||| | || | || || | | || ||||| | || | | Sbjct 37706854 -CTGAATCTTTGCCTTTACATTATCAATGGTATCAGAGCTTTCAACCTCCAAAGTAATGG 37706912 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || |||||||| ||||| || |||||||| Sbjct 37706913 TCTTTCCAGTCAACGTCTTTACAAAAATTTGCAT 37706946 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | || || || || || ||||||||||| | || || ||| Sbjct 37712439 CAAAACCAAGTGCAGAGTGGATTCCTTCTGTATGTTATAATCCGCAAGGGTCCTTCCGTC 37712498 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| || ||| |||| || | |||||||| || || || || || || || Sbjct 37712499 TTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATACCCTCCTTATC 37712558 Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | |||| ||| | | || | ||| || | |||||| || | ||| | | Sbjct 37712559 -CTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAACTCTCCACTTCCAAGGTTATGG 37712617 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || ||||| || || || || ||||||||| Sbjct 37712618 TCTTTCCTGTCAAAGTCTTGACAAAAATTTGCATA 37712652 >seq3 Length=41204908 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || |||||||| || ||||| || ||| Sbjct 291389 GCCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGC 291330 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| ||||||||||| || || |||| |||||||||||||| || || Sbjct 291329 GAGGGTGCGACCGTCCTCGAGCTGTTTTCCTGCGAAGATGAGACGTTGCTGATCTGGTGG 291270 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| | | |||||| Sbjct 291269 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCAC 291210 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 ||||| ||| | ||||| || || | ||||| |||||||| ||||| || Sbjct 291209 CTCAAGGGTGATTGTCTTCCCCGTAAGGGTTTTCACGAATATCTGCATTGC 291159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || |||||||| || ||||| || ||| Sbjct 288801 GCCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGC 288742 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| || ||||| || || || |||| ||||| |||||||| || || Sbjct 288741 GAGGGTGCGACCGTCCTCAAGCTGCTTTCCTGCGAAGATGAGACGCTGCTGATCTGGTGG 288682 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| | | |||||| Sbjct 288681 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAAGACTCCAC 288622 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| ||| | ||||| || || | ||||| |||||||| ||||| ||| Sbjct 288621 CTCAAGGGTGATTGTCTTCCCCGTAAGGGTTTTCACGAATATCTGCATCGCT 288570 >seq6 Length=19356003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || |||||||| || ||||| || || Sbjct 11947016 GCCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGC 11947075 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| ||||| || || || || |||| ||||| |||||||| || || Sbjct 11947076 GAGAGTGCGGCCGTCCTCGAGTTGCTTTCCTGCGAAGATGAGACGCTGCTGATCCGGTGG 11947135 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| | | |||||| Sbjct 11947136 GATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAAGACTCCAC 11947195 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| || || | ||||| |||||||| ||||| Sbjct 11947196 CTCAAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 11947243 >seq5 Length=30687117 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || ||| | |||| ||| |||||||| || || Sbjct 9179504 GTGGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 9179445 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || || || ||||| || || || ||| || || Sbjct 9179444 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 9179385 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||||||||||| ||| | ||||| || || | ||| Sbjct 9179384 ACATTATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTT 9179325 Query 139748 TTTACGAATATTTGCATAGC 139767 || |||||||| ||||| || Sbjct 9179324 TTCACGAATATCTGCATTGC 9179305 >seq2 Length=35625406 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||||| ||||| || || || || || ||||| || ||| Sbjct 31177191 GCCACCGCGGAGACGGAGAACTAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGC 31177250 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | |||| || | || |||||||| || ||||| |||| ||||||||||| || || | Sbjct 31177251 GAGGGTGCGTCCA-TCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGGG 31177309 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| ||||| ||| || || | | || | || |||| | ||| | Sbjct 31177310 GAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTATCGGAGCTCTCGA 31177369 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| ||||| | || || ||||| || ||||| Sbjct 31177370 CCTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATCTGCAT 31177418 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||||| ||||| || || || || || ||||| || ||| Sbjct 31176963 GCCACCGCGGAGACGGAGAACTAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGC 31177022 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || ||||||||||| ||||| |||||| | ||||| || || || Sbjct 31177023 GAGGGTGCGGCCATCCTCGAGCTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGGGG 31177082 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || |||| | || | ||||| | | |||||| Sbjct 31177083 AATTCCCTCCTTGTCCTGGATCTTAGCCTTTACGTTGTCGATGGTGTCAGAGCTCTCCAC 31177142 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| ||||| | || || || || || ||||| Sbjct 31177143 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACAAAGATCTGCAT 31177190 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||||| ||||| || || || || || ||||| || ||| Sbjct 31177419 GCCACCGCGGAGACGGAGAACTAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGC 31177478 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || ||||||||||| ||||| |||| ||||||||||| || || || Sbjct 31177479 GAGGGTGCGGCCATCCTCGAGCTGTTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGGGG 31177538 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || || | | || | || |||| | ||| || Sbjct 31177539 AATTCCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATAGTATCGGAGCTCTCGAC 31177598 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| ||||| | || || ||||| || ||||| Sbjct 31177599 CTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATCTGCAT 31177646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495832245100000