Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq5 86.0 6e-12 >seq1 Length=42234885 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||| | ||| || || | || ||||| ||||| ||||||||||| | || || Sbjct 37703223 AAACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTT 37703282 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||| || |||||||||||||| | ||||| | |||||||| ||||| || |||||| Sbjct 37703283 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGGATACCTTCT 37703342 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| || || || | | || | || || | || ||| || || | || Sbjct 37703343 TTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCGGAGGATTCCACCTCGAGTGTG 37703402 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || |||||||| ||||| ||||| |||||||| Sbjct 37703403 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 37703440 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| ||||||||||| | |||| || |||||||| ||||| Sbjct 37707434 GTGGATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGCTTACCC 37707493 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | ||||| || || || || || || ||||| ||| ||| ||| Sbjct 37707494 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTTGCTTTC 37707553 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| || |||| || | || ||||||||||| ||| Sbjct 37707554 ACGTTATCAATGGTGTCGGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTCAAAGTT 37707613 Query 143168 TTTACGAATATTTGCAT 143184 || |||||||| ||||| Sbjct 37707614 TTCACGAATATCTGCAT 37707630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || || ||||||||| | || ||| || || || ||||||||| Sbjct 37712911 GTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATCCTCAAGCTGTTTACCA 37712970 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | ||||| | ||||||||| ||||| || || |||||||| || || || Sbjct 37712971 GCAAAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTG 37713030 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||||||||||| || | |||||||| ||||| ||| Sbjct 37713031 ACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTTATGGTCTTGCCAGTCAAAGTT 37713090 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 37713091 TTCACAAAGATCTGCAT 37713107 >seq5 Length=30687117 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 142953 CATGG--CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTA 143010 ||||| ||||||| | | ||| || || |||| |||||||| ||||||||||| || Sbjct 2508634 CATGGTTCCTCCTCTGAGCCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGTATGTTATA 2508575 Query 143011 ATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 143070 ||| | ||||| ||||| ||||| ||||||||| | |||| | ||||| || Sbjct 2508574 ATCAGCAAGTGTGCGACCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTC 2508515 Query 143071 GGGAGGTATGCCTTCTTTGTC 143091 ||||| || ||||| ||||| Sbjct 2508514 AGGAGGGATACCTTCCTTGTC 2508494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506777529210000