Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq5 86.0 5e-12 >seq1 Length=42234885 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | |||||| ||||| || || || ||||| || |||||||| ||||| | Sbjct 37712425 CCACCACGAAGCCTCAAAACCAAGTGCAGAGTGGATTCCTTCTGTATGTTATAATCCGCA 37712484 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || | ||||| | ||||| || ||| | ||||||||||| ||||| ||| Sbjct 37712485 AGGGTCCTTCCGTCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGG 37712544 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || || || ||| ||| |||||| | | ||| | ||| | ||| | Sbjct 37712545 ATACCCTCCTTATCCTGAATCTTTGCTTTCACATTGTCAATTGTATCTGAACTCTCCACT 37712604 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||| || || ||||| || ||||||||||||||||| Sbjct 37712605 TCCAAGGTTATGGTCTTTCCTGTCAAAGTCTTGACAAAAATTTGCAT 37712651 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | |||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 37706946 TTCCCCCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAATCCG 37707005 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| | |||||| | ||||| || ||| | ||||||||||| || || || Sbjct 37707006 CAAGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGGGG 37707065 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || || || || ||| || |||||| | ||| | ||| | ||| Sbjct 37707066 GGATACCCTCCTTATCCTGAATCTTGGCTTTCACATTATCAATGGTATCTGAACTCTCCA 37707125 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| ||||| || || ||||| || |||||||| |||||||| Sbjct 37707126 CCTCTAAGGTTATGGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGCAT 37707174 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || |||||||| || |||||||| || ||| || | |||||||||||| Sbjct 37712221 TGAAGGGTGGATTCTTTCTGAATGTTGTAGTCTGCCAAGGTACGACCATCTTCCAATTGC 37712280 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| ||||||||||||| ||||| || | ||| || ||||| ||| ||| Sbjct 37712281 TTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGAATCTTT 37712340 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 ||||| | ||| | ||| |||| |||| |||||||||||| || ||| Sbjct 37712341 GTCTTCACATTATCAATTGTATCAGAGCTTTCCACCTCCAAGGTAATGGTTTTCCCTGTC 37712400 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | || || |||||||| ||||| Sbjct 37712401 AGAGTCTTCACAAAAATCTGCAT 37712423 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | |||||| ||||| || | ||||| || || || || || ||||| | Sbjct 37702986 CCACCTCGAAGCCTCAAAACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAATCCGCA 37703045 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | ||||| || ||| | ||||||||||| |||||| ||| Sbjct 37703046 AGGGTTCTTCCATCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCGGGGGGA 37703105 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || || || || ||| || ||| || | ||| | ||| | ||| Sbjct 37703106 ATACCCTCCTTATCCTGAATCTTGGCTTTGACATTATCAATGGTATCTGAACTCTCCACC 37703165 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| |||||| ||||| |||||||| || |||||||| |||||||| Sbjct 37703166 TCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 37703212 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| || || |||||||| || ||| || | ||||||||||||| Sbjct 37706516 TGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGT 37706575 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| ||||||||||||| ||||| || | ||| || ||||| ||| ||| Sbjct 37706576 TTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATCTTT 37706635 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| | ||| || | ||| |||| ||||||||| || || || Sbjct 37706636 GCTTTCACATTATCAATTGTATC-AGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGT 37706694 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 || || || ||||| || |||||| Sbjct 37706695 CAGAGTCTTCACAAATATCTGCATT 37706719 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | |||||||||||| || || |||||||| || || ||||| ||||| Sbjct 37706718 TTCCACCACGAAGCCTCAACACCAAGTGCAGAGTAGATTCCTTCTGGATGTTATAATCAG 37706777 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| |||||||| || || || ||| | |||||||| || || || | Sbjct 37706778 CAAGGGTTCGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGTG 37706837 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| ||| ||| || || | ||| | ||| ||| Sbjct 37706838 GAATCCCCTCTTTGTCCTGAATCTTTGCCTTTACATTATCAATGGTATCAGAGCTTTCAA 37706897 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| |||||||| || || |||||||| || ||||||||||||||| Sbjct 37706898 CCTCCAAAGTAATGGTCTTTCCAGTCAACGTCTTTACAAAAATTTGCATT 37706947 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || || | |||||||||||| || || || |||||||| || ||||| ||||| Sbjct 37702528 TTCCACCACGAAGCCTCAACACCAAGTGCAGAGTGGATTCTTTCTGGATGTTATAATCTG 37702587 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | || ||||||||| || || || ||| | ||||| ||||| || || | Sbjct 37702588 CAAGGGTACGCCCATCTTCCAACTGCTTCCCAGCAAAGATAAGTCTCTGCTGGTCCGGTG 37702647 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| ||| ||| || || | | ||| || || ||| Sbjct 37702648 GGATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTGTCAATAGTGTCAGAGCTTTCAA 37702707 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || |||||||| || || || || || |||||||| |||||| Sbjct 37702708 CCTCCAAAGTTATGGTTTTCCCAGTTAAAGTCTTCACAAAAATCTGCATT 37702757 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||| ||||| ||||||||||| | | ||| | || || Sbjct 37703232 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTCA 37703291 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | |||||| || || |||| |||||||| ||||| || | ||||||||||| Sbjct 37703292 AGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTGG 37703351 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||||| | ||| | |||| | |||| || | || || ||||| Sbjct 37703352 ATCTTAGCCTTCACATTATCAATGGTATCGGAGGATTCCACCTCGAGTGTGATAGTTTTT 37703411 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||||| ||||| || || |||||||| Sbjct 37703412 CCGGTCAAAGTTTTCACGAAGATTTGCAT 37703440 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || ||||| ||||| ||||||||||| | | ||| | ||| || | ||| Sbjct 37707428 TGGAGAGTGGATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGC 37707487 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || |||||| | ||||| ||||| || || || | || || ||||| ||| ||| Sbjct 37707488 TTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTT 37707547 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 |||||| | ||| | ||| | ||| || | ||| ||||||||||||||| Sbjct 37707548 GCTTTCACGTTATCAATGGTGTCGGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTC 37707607 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 || ||||| || || || ||||| Sbjct 37707608 AAAGTTTTCACGAATATCTGCAT 37707630 >seq5 Length=30687117 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 19970 TTTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTAT 20028 ||| ||||| ||||||||| | |||||| ||||| || || |||||||| |||||||| Sbjct 2508640 TTTAATCATGGTTCCTCCTCTGAGCCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGTAT 2508581 Query 20029 GTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTG 20088 ||| ||||| | | || | |||||||| ||| || || ||| |||| | |||||| Sbjct 2508580 GTTATAATCAGCAAGTGTGCGACCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTG 2508521 Query 20089 TTGATCGACGGGCACGCCTTCTTTGTC 20115 || || || | ||||| ||||| Sbjct 2508520 CTGGTCAGGAGGGATACCTTCCTTGTC 2508494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419396074752375