Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq109 98.7 8e-16 seq2 98.7 8e-16 seq6 87.8 2e-12 seq3 82.4 6e-11 >seq1 Length=42234885 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || || ||| ||||||||||||||||||||||| | || ||||||| Sbjct 37703232 ACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGCAAGGGTTCTTCCGTCCTCA 37703291 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || || ||||| || |||| | | |||||||||| || | || ||| |||||| Sbjct 37703292 AGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGGATACCTTCTTTGTCCTGG 37703351 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | |||||||||| || ||| ||||| ||| || ||||| Sbjct 37703352 ATCTTAGCCTTCACATTATCAATGGTATCGGAGGATTCCACCTCGAGTGTGATAGTTTTT 37703411 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| | ||||||||| || || |||||| Sbjct 37703412 CCGGTCAAAGTTTTCACGAAGATTTGCATC 37703441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| ||||||||||||||||||||||| ||| || || | ||||| ||||| Sbjct 6126237 TGGAGGGTGGACTCCTTTTGAATGTTGTAATCAG-CAAGGGTACGACCATCCTCAAGCTG 6126295 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || || | |||| | ||| ||||| ||| || | | ||||||||| ||| || Sbjct 6126296 TTTGCCAGCAAAAATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTT 6126355 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 || | | | |||||||| | ||| |||| || ||||| |||||||| Sbjct 6126356 GGCTTTCACATTATCAATGGTATCTGAGCTCTCTACTTCGAGAGTGATGGTCTTACCGGT 6126415 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 |||||| || || || || |||||| Sbjct 6126416 GAGAGTCTTAACGAAGATTTGCATC 6126440 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | | ||| || || || || |||||| ||||| ||||||||||| Sbjct 37712652 ACCACCTCTCAAACGAAGCACCAAGTGCAGGGTTGACTCCTTCTGAATATTGTAATCAGC 37712711 Query 48559 CAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||| || || ||||| || |||| | | ||||||||| | Sbjct 37712712 -AAGGGTCCTTCCATCCTCAAGTTGTTTACCAGCGAAAATAAGCCTCTGCTGATCAGGAG 37712770 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | || ||||| || || ||||| | | |||||||| | | |||| Sbjct 37712771 GGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCA 37712830 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||||||||| || || | ||| || |||||||||||||| Sbjct 37712831 CCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 37712879 >seq109 Length=622178 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| ||||||| || | |||||||| || Sbjct 289720 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCCAGTTG 289779 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || ||||||||||| || || | | |||||||||| |||||| Sbjct 289780 CTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATTTT 289839 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||| | | | || ||||| |||| | |||| ||||| |||||||| ||||| Sbjct 289840 GGCCTTTACGTTGTCG--ATGGTGTCGGAACTCTCCACCTCGAGAGTTATGGTCTTACCA 289897 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || || || || || |||||| Sbjct 289898 GTCAAGGTCTTAACGAAGATTTGCATC 289924 >seq2 Length=35625406 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| ||| ||||| ||||||||||||||||| || ||| || ||||||||||| Sbjct 31176304 TGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGC-AAGGGTCCTTCCATCCTCCAGCTG 31176362 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || ||| || | || || | |||||| ||| || | | ||||||||| || || Sbjct 31176363 TTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTT 31176422 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| || | ||| ||||| || ||||| || ||| Sbjct 31176423 AGCCTTGACGTTGTCG--ATGGTGTCAGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCG 31176480 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| |||||||| |||||||| Sbjct 31176481 GTGAGAGTCTTCACAAAGATCTGCAT 31176506 >seq6 Length=19356003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| ||| || || |||||||| || || | | || || ||||||| || || Sbjct 11947041 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGCGAGAGTGCGGC-CGTCCTCGAGTTG 11947099 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||||||| || | | ||||||||| || || Sbjct 11947100 CTTTCCTGCGAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTGTCCTGGATCTT 11947159 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | ||||||| ||| | || ||||| || || || Sbjct 11947160 AGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGT 11947219 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| || ||||||||| Sbjct 11947220 AAGGGTTTTCACGAATATCTGCATC 11947244 >seq3 Length=41204908 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| ||| || || |||||||| || || | || ||||||| |||||| Sbjct 288776 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGC 288717 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || | || | |||||||||||| || | | ||||||||| || || Sbjct 288716 TTTCCTGCGAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGGATCTTG 288657 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||||| ||| | || || || || || || Sbjct 288656 GCCTTGACATTATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTA 288597 Query 48704 AGAGTTTTCACAAAAATCTGCATCG 48728 || |||||||| || |||||||||| Sbjct 288596 AGGGTTTTCACGAATATCTGCATCG 288572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421059316787375