Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8 111 8e-20 seq269 109 3e-19 seq10 109 3e-19 seq7 107 1e-18 seq1 105 3e-18 seq4 104 1e-17 seq2 104 1e-17 seq9 95.1 6e-15 seq199 93.3 2e-14 >seq8 Length=30791815 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 ||||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 26949508 TCAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTA 26949449 Query 11510 ACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| Sbjct 26949448 ACCAACTGAGCTAATAGGCC 26949429 >seq269 Length=1102413 Score = 109 bits (120), Expect = 3e-19 Identities = 78/90 (87%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 11444 AAAAAATCAAATT----GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| ||||| |||||||| | | |||||||| |||||||||||||||||||| Sbjct 709964 AAAAAATGAAATTTTGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 710023 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 710024 CGACGCTCTAACCAACTGAGCTAATAGGCC 710053 >seq10 Length=40424437 Score = 109 bits (120), Expect = 3e-19 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||| | ||||| ||| ||||||||| | | |||||||| |||||||||||||| ||| Sbjct 34316795 ATTAAAACAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAATAG 34316736 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||| |||||||||| |||| Sbjct 34316735 CACGACGCTCTAACCAGCTGAGCTAATAGGCC 34316704 Score = 105 bits (116), Expect = 3e-18 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| | |||| ||||||||||||| | | |||||||| |||||||||||||||||| Sbjct 34324803 ATTATTTCAAAACAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 34324744 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||| |||| |||||||||| |||| Sbjct 34324743 CACGGCGCTCTAACCAGCTGAGCTAATAGGCC 34324712 Score = 105 bits (116), Expect = 3e-18 Identities = 86/104 (83%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAAT--AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||||| | ||| | | |||||| ||||||||||||| | | |||||||| |||||| Sbjct 34368463 GAAATAAAAAATCACTTAAAAAAAATAAATTGGCCCATGCAGGTCTCGAACCTGCGACCT 34368404 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| | |||| ||||| |||| |||| Sbjct 34368403 TCGCGTTATTAGCACGACGCTTTAACCAGCTGAGGTAATAGGCC 34368360 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 27019326 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 27019385 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 27019386 TGAGCTAATAGGCC 27019399 Score = 100 bits (110), Expect = 1e-16 Identities = 77/91 (85%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || || || | ||||| |||||||| | | |||||||| ||||||||||||||||||| Sbjct 27104082 AAAAATAATTAAAATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 27104141 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 27104142 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 27104172 Score = 98.7 bits (108), Expect = 5e-16 Identities = 77/91 (85%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 11444 AAAAAAT-CAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||| |||| |||||||||| | | |||||||| ||||||| ||||||||||| Sbjct 12157185 AAAAAATGCAAAACTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGC 12157244 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||| ||||||||||||||| |||| Sbjct 12157245 ACCACGCTCTAACCAACTGAGCTAATAGGCC 12157275 >seq7 Length=39404547 Score = 107 bits (118), Expect = 1e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || |||| | || |||||||||| | || |||||||| |||||||||||||||||||||| Sbjct 23728928 ATTAAAATTTAATTTGGCCCATGCAGGGCTCGAACCTGCGACCTTCGCGTTATTAGCACG 23728987 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||| ||||||||| ||||| |||| Sbjct 23728988 ATGCTCTAACCAACTGACCTAATAGGCC 23729015 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 8117162 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 8117103 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 8117102 TGAGCTAATAGGCC 8117089 Score = 95.1 bits (104), Expect = 6e-15 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 11443 TAAAAAATC------AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||||||| ||| ||||||||| | | || ||||| ||||||||||||||||| Sbjct 18790033 TAAAAAATCTAAAAGAAAATGGCCCATGCAGGTCTCAAACCTACGACCTTCGCGTTATTA 18790092 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||| ||||||| ||||||||||||||| || Sbjct 18790093 GCACAACGCTCTAACCAACTGAGCTAATAGG 18790123 Score = 95.1 bits (104), Expect = 6e-15 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || |||| |||| |||||||||| || || ||||| |||||||||||||||||||| Sbjct 23767929 ATTAAAATTCAATTTGGCCCATGCAATC-TCAAACCTGAGACCTTCGCGTTATTAGCACA 23767987 Query 11502 ACGCTCTRACCAACTGAGCTAAT 11524 ||||||| ||||||||||||||| Sbjct 23767988 ACGCTCTAACCAACTGAGCTAAT 23768010 Score = 82.4 bits (90), Expect = 4e-11 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||| | || |||||||||| | | | |||||| | ||||||||| |||||||||||||| Sbjct 23746123 AAATTTAACTTGGCCCATGCAGGTCTTGAACCTACAACCTTCGCGATATTAGCACGACGC 23746182 Query 11506 TCTRACCAACTGAGCTAAT 11524 | | || |||||||||||| Sbjct 23746183 TTTAACAAACTGAGCTAAT 23746201 >seq1 Length=42234885 Score = 105 bits (116), Expect = 3e-18 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| | ||||| ||| || |||||||||| | | |||||||| ||||||| | Sbjct 4527821 AAATATAATAAGAATAATAAA--AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTGG 4527878 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||| ||||||||||||||| |||| Sbjct 4527879 CGTTATTAGCACCACGCTCTAACCAACTGAGCTAATAGGCC 4527919 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11446 AAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| ||||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 24292429 AAAAACAAATATTGGCCCATGCAGGCCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 24292370 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 24292369 GCTCTAACCAGCTGAGCTAATAGGCC 24292344 >seq4 Length=34671004 Score = 104 bits (114), Expect = 1e-17 Identities = 77/90 (86%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11442 ATAAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| | ||||||||||||| | | |||||||| |||||||||||||||||||| Sbjct 20208325 ATAAAAACACCAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 20208384 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||| |||| |||||||||| |||| Sbjct 20208385 CGACGTTCTAACCAGCTGAGCTAATAGGCC 20208414 >seq2 Length=35625406 Score = 104 bits (114), Expect = 1e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 25336808 AAAAGGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 25336749 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 25336748 TCTAACCAGCTGAGCTAATAGGCC 25336725 Score = 104 bits (114), Expect = 1e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 25340142 AAAAGGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 25340083 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 25340082 TCTAACCAGCTGAGCTAATAGGCC 25340059 >seq9 Length=31747250 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 28067094 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGATGCTCTAACCAAC 28067153 Query 11516 TGAGCTAATGGGCC 11529 ||| ||||| |||| Sbjct 28067154 TGACCTAATAGGCC 28067167 >seq199 Length=701003 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||| | | ||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 342676 AAAAAATACTTAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 342735 Query 11501 GACGCTCTRACCAACTGA 11518 |||||||| |||| |||| Sbjct 342736 GACGCTCTAACCAGCTGA 342753 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261372088715500