Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq5 84.2 2e-11 >seq1 Length=42234885 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || |||||| | || || |||| || || || | Sbjct 37703440 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACACTCGAGGTGGAATCCTCC 37703381 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || ||||| ||||||||||| || ||||| ||||| Sbjct 37703380 GATACCATTGATAATGTGAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATCAG 37703321 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| || || || ||||| || || | |||| | | ||||| ||| Sbjct 37703320 CAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAAC 37703261 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| ||||| || Sbjct 37703260 ATTCAAAAGGAATCCAC 37703244 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | || ||||| | || ||| | || ||||| | Sbjct 6126212 AATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTCGAAAGCTC 6126153 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | ||||| |||||| ||||| || || || || || || || Sbjct 6126152 TGACACTATAGACAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCA 6126093 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || || | | ||| |||||||| ||||||| | ||| | | |||||||| Sbjct 6126092 GCAGAGGCTCATATTTGCCGGAAAGCAACTAGAAGATGGCCGAACCTTGGCAGATTATAA 6126033 Query 24170 CATTCAAAAAGAATCTAC 24187 |||||| |||||||| || Sbjct 6126032 CATTCAGAAAGAATCAAC 6126015 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| || || |||||||| | ||||| | || || || | Sbjct 37706947 AATGCAAATTTTTGTAAAGACGTTGACTGGAAAGACCATTACTTTGGAGGTTGAAAGCTC 37706888 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || || ||||||| |||||||| || || || || || || Sbjct 37706887 TGATACCATTGATAATGTAAAGGCAAAGATTCAGGACAAAGAGGGGATTCCACCAGACCA 37706828 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || || || | | || ||||| || ||||||| ||| | | |||||||| Sbjct 37706827 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 37706768 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 ||| || || |||||||| | || || ||||| || Sbjct 37706767 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAG 37706732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || |||||||| ||| | || || | || || || | Sbjct 37702757 AATGCAGATTTTTGTGAAGACTTTAACTGGGAAAACCATAACTTTGGAGGTTGAAAGCTC 37702698 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || ||||||| ||||| |||||||| || || || || Sbjct 37702697 TGACACTATTGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCGGACCA 37702638 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||||| || | | || ||||| | ||||||| | | | | |||||||| Sbjct 37702637 GCAGAGACTTATCTTTGCTGGGAAGCAGTTGGAAGATGGGCGTACCCTTGCAGATTATAA 37702578 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 ||| || |||||||| || | || || ||||| || Sbjct 37702577 CATCCAGAAAGAATCCACTCTGCACTTGGTGTTGAG 37702542 >seq5 Length=30687117 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| ||||| || ||||| || || ||||| |||||| | || |||||||| ||| Sbjct 2508494 GACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 2508553 Query 24144 GATGACAGAA-ACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGT 24201 |||| | | || | || ||||||||||| ||||| |||||||| |||| || || | Sbjct 2508554 GATGGTCGCACACTT--GCTGATTATAACATACAAAAGGAATCTACCCTTCACTTGGTCT 2508611 Query 24202 TAAGATTGAGAGGAGGA 24218 | || | ||||||||| Sbjct 2508612 TGAGGCTCAGAGGAGGA 2508628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429740160793125