Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 143 3e-29 seq1 102 1e-16 >seq3 Length=41204908 Score = 143 bits (158), Expect = 3e-29 Identities = 385/581 (66%), Gaps = 12/581 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||||| || ||||||||||| | || | ||||||||| || |||||| Sbjct 26200340 CAAGCGAAGTCGCAATGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 26200399 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAAAGAA 32779 || ||||| ||||| || || || ||||| || ||||| ||||| | ||| || ||||| Sbjct 26200400 CCTGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATGGA-GCAAAAGCTTCCGGAGAAGAA 26200458 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGTCATG 32836 || || || || |||||||| | || | ||| | | || ||| | ||| Sbjct 26200459 GATACCCTCGACGCAGGCAAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGTC--- 26200515 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| | ||||| | ||||||||| | || || || || || || || || | Sbjct 26200516 GATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTG 26200575 Query 32897 AAAGAGATAGtttttttCATTAC--TATCTTTAACATATGTATCAATCAAAAGACTATAC 32954 ||||||| | |||| || ||| ||||| | || || || | | || || ||| Sbjct 26200576 AAAGAGACGGGTTTTCTC--TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTAC 26200633 Query 32955 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTA 33014 || || || |||||||| || || || || || || ||||| ||| | |||||||| Sbjct 26200634 ATCTCGGAGTGAATGTTCTCGATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAG 26200693 Query 33015 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 | ||| || || | ||| || | || | ||||| || || ||||| ||| Sbjct 26200694 ACCTGGACCTCCTTCATAAAACGGCCGGCAAGGTTTTCTAGTACGATGCCGTCGGAGGCG 26200753 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 33134 || || || || | ||||| | | |||| ||| | || || | ||||| Sbjct 26200754 GCGAAGAAGGCGAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAG 26200813 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 | | |||| || | || | ||||| || ||| | ||||| || || || ||||| || Sbjct 26200814 TGACTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTC 26200873 Query 33195 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || ||||| | |||||| | | ||||| || || || || Sbjct 26200874 TTGTACATTTCCCAGATTTGGGGGTATTGGATAGGGAACAT 26200914 Score = 120 bits (132), Expect = 4e-22 Identities = 242/354 (68%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| |||||||| || || || |||| || | ||||||||| || ||||| Sbjct 34261340 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGA 34261281 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 |||||||| | ||||||||| || ||||||||||| || ||| | | | || || ||||| Sbjct 34261280 CCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 34261222 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 ||||| || || || ||||| | || | ||| | | | || || ||| || Sbjct 34261221 GATTCCCTCAACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGGTGGCATCGAT 34261162 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||| ||||| | ||||||||| ||||| || || || || | || || Sbjct 34261161 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAA 34261102 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 || | || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 34261101 CAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 34261042 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAG-AAGCATCTAGCCTCGG 33012 || || ||||| || ||||| || || || |||||| ||||| | |||||||| Sbjct 34261041 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCA-CGAGCCTCGG 34260989 >seq1 Length=42234885 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 || |||| ||| || ||||| | ||| | ||| || | ||| | || | || |||||| Sbjct 1930113 CCTTTTGCCTCCCCCTTGATCCACGTAACGAGCAGTATCATTGAACACACGCAGCATTGG 1930054 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 || ||||||||| ||||| ||||| || || ||| || || || ||||||||||||| Sbjct 1930053 AACAATACCATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATT 1929994 Query 63337 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 || || | ||| ||||| || || ||| || | || || || || || Sbjct 1929993 GTGAACAGAAACACCAATTCCACCGGCTGATTTGCTAATGATAGCACACTCCTTCAAAGT 1929934 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATG 63430 ||||| || ||||||||||||||||| ||||| Sbjct 1929933 GTCATATATTCCCTCTATACTATCATCTTTCATG 1929900 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 |||||||| || || | || ||||| || ||||| ||||| || ||| | || | | Sbjct 1929747 GTTCCCGCGTTGAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATCAGGTGG 1929688 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || | | ||| | || || || | ||||||||| || ||||| | ||| ||| Sbjct 1929687 TAAGTTTTGACAGCAGCATCAATGTCTTCCTTATGAATTCCAACAGCGACCCTCATCAAC 1929628 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||| || |||||||| || | |||| | | || || | |||||| | || | Sbjct 1929627 ATGTGTTGTGGTCTTTCCACAACCTTGCCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 1929568 Query 63647 GTTTTAAAACCAAAATA 63663 ||||| ||||||||||| Sbjct 1929567 GTTTTGAAACCAAAATA 1929551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633335975050000