Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 129 7e-25 seq9 91.5 2e-13 seq7 87.8 2e-12 seq32408 86.0 7e-12 seq238 86.0 7e-12 seq4 86.0 7e-12 seq2 86.0 7e-12 seq1 82.4 8e-11 >seq3 Length=41204908 Score = 129 bits (142), Expect = 7e-25 Identities = 502/775 (65%), Gaps = 17/775 (2%) Strand=Plus/Plus Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 || |||||||| ||||| || ||||||||| |||||| | | ||||| || | | | Sbjct 26200169 AACCTATCAGCAACAAACTCAATGTACTGACTCATCAAGGCCCCGTTCATCCCCACCA-A 26200227 Query 92981 CGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 || ||| || || |||||| | ||| || ||||||| | || || || || || Sbjct 26200228 CGCACAAGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACAGCATCGCGCACAAT 26200287 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTG--TACATTAAGCACGCA 93097 || | || | || | || | || || || |||||| | || | | ||| || Sbjct 26200288 CTCCCTCACGCG-CTCCTCGGGGAGCTTGGTCCG-CATAATAGAGTAGAGCAGGCAAGCG 26200345 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 |||||| ||| | ||| ||||| || || || | || ||| ||| || | ||||| Sbjct 26200346 AAGTCGCAATGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGGC 26200405 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACCAGaaaaaaaTATACC 93216 | || || |||||||||||||| || | || ||||||| || || || || || ||||| Sbjct 26200406 ATGAGGCCCCGTTTCTTGAGCCAGAAGA-TGGAGCAAAAGCTTCCGGAGAAGAAGATACC 26200464 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 || ||| ||||| || || | || ||||| || |||| | |||||| Sbjct 26200465 CTCGACGCAGGCAAAGGCGACGAGGCGCTCGGCGAAGGACTCGGA---GGAGTCGATCCA 26200521 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | ||||| | ||| || || | | || || | || || || |||| ||| || Sbjct 26200522 GCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTGAAAGAG 26200581 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | ||| | || ||| |||||| || |||| | || ||||| || || Sbjct 26200582 ACGGGTTTTCTCTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGA 26200641 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA- 93455 || | ||||| || || || ||||| ||||| || | ||| || | || ||| | Sbjct 26200642 GTGAATGTTCTCGATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAGACCTGGAC 26200701 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 || ||| | |||| | | | || ||||| || || || ||||| || || || | Sbjct 26200702 CTCCTTCATAAAA-CGGCCGGCAAGGTTTTCTAGTACGATGCCGTCGGAGGCGGCGAAGA 26200760 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGA 93573 | || | | ||| | | ||||| ||| | || |||| | | ||| | | || Sbjct 26200761 AGGCGAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAGTGACTGA 26200820 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | || | || || || || || || | ||||| ||||| ||||||||||| ||||| Sbjct 26200821 T--GTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTCTTGTA 26200878 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTA 93688 ||| ||||| || | | ||||| || || || ||| || |||| ||||||| Sbjct 26200879 CATTTCCCAGATTTGGGGGTATTGGATAGGGAACATGCAGAATCGATCAGGGTTA 26200933 >seq9 Length=31747250 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 3609233 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 3609174 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||| || ||||| |||||||| Sbjct 3609173 GTGGGTTCAAATCCCACTTCTGACAAA 3609147 >seq7 Length=39404547 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || ||| | || Sbjct 38351567 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTTCGTGGGC 38351508 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 38351507 GTGGGTTCAAATCCCACTTCTGACA 38351483 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 3671611 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 3671670 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||| || ||||| |||||||| Sbjct 3671671 GTGGGTTCAAATCCCACTTCTGACAAA 3671697 >seq32408 Length=452 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/105 (79%), Gaps = 4/105 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 59 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| ||| |||| || | ||||| || Sbjct 60 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTAGTTTTTTTTTT 102 >seq238 Length=248015 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/107 (79%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || | | | || Sbjct 31474 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTTTGAGGGC 31415 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| ||||| ||||| || ||||||| || Sbjct 31414 GTGGGTTCAAATCCCACTTCTGAC--ATTAT--TTTAAATTTTTTTT 31372 >seq4 Length=34671004 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/105 (79%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 11394843 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 11394786 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| ||| |||| || | ||||| || Sbjct 11394785 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTAGTTTTTTTTTT 11394743 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 33805171 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 33805112 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 33805111 TGGGTTCAAATCCCACTTCTGACA 33805088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/99 (81%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 33056280 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 33056337 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||| || |||||| ||| | | ||||| ||| |||||| Sbjct 33056338 TTCAAATCCCACAGCTGTC-ATTTATT-TTGTTATTTTT 33056374 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/88 (82%), Gaps = 4/88 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 33033231 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 33033174 Query 126328 TTCGAACCCCACACCTGACAAATTATTA 126355 ||| || |||||| ||| | ||||||| Sbjct 33033173 TTCAAATCCCACAGCTGTC--ATTATTA 33033148 >seq2 Length=35625406 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/105 (79%), Gaps = 4/105 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 31167780 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 31167723 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| ||| |||| || | ||||| || Sbjct 31167722 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTAGTTTTTTTTTT 31167680 >seq1 Length=42234885 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG 126318 || || || ||| |||||||||||||||||||||||||||||| | |||||| || Sbjct 31970370 ATCTAAAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAA 31970313 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACA 126347 | |||||||||| || |||||| ||| || Sbjct 31970312 GGGCGTGGGTTCAAATCCCACAGCTGTCA 31970284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556600641595000