Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 >seq1 Length=42234885 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/227 (68%), Gaps = 18/227 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||| ||| || |||||||||||||| |||||||| || Sbjct 37712206 AGGCGAAGGACAAGGTGAAGGGTGGATTCTTTCTGAATGTTGTAGTCTGCCAAGGTACGA 37712265 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| || ||||| || || | ||||||||| || | || ||| Sbjct 37712266 CCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGGATGCCCTCC 37712325 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGACC 34086 |||||| ||| ||| || ||||| ||||| | | || || ||| ||| Sbjct 37712326 TTGTCCTGAATCTTTGTCT---------TCACATTATCAATTGTATCAGAGCTTTCCACC 37712376 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||||| || || || || |||||||| || ||||| Sbjct 37712377 TCCAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACAAAAATCTGCAT 37712423 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 33898 AAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCT 33957 || ||||| | || |||| ||||| ||||| ||| ||| ||||||||||||||||| Sbjct 6125526 AACCCTCCACGAAGACGCAATACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCA 6125585 Query 33958 GCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| || | | | || ||||||||||| || ||||| |||| | ||||||||| Sbjct 6125586 G-CAAGAGTCCTCCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATC 6125641 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/241 (68%), Gaps = 18/241 (7%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | || || || || || || || ||| ||||||||||||||||| || Sbjct 37706488 GAAGCCACCACGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 37706547 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||||| || | || |||||||| || || ||||| || || | ||||||||| Sbjct 37706548 TGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 37706607 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076 || | || ||| |||| | | | | ||||||| ||||| ||||| | | || Sbjct 37706608 TGGAATGCCCTCCTTGT-CTTGAATCTTTGCTT--------TCACATTATCAATTGTATC 37706658 Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || ||| || || || ||||| || || || |||||||| || ||||| Sbjct 37706659 AGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACAAATATCTGCAT 37706718 Query 34128 T 34128 | Sbjct 37706719 T 37706719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396881534974750