Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 132 6e-26 seq182 107 2e-18 seq9 89.7 6e-13 seq5 82.4 9e-11 >seq3 Length=41204908 Score = 132 bits (146), Expect = 6e-26 Identities = 304/454 (67%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || ||||||||||||||||| |||||||| | || || |||||| Sbjct 26200054 GTACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATCAGCTCCAT 26200113 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 127349 |||| |||||||||| | || | | | |||||| || ||| | | Sbjct 26200114 CCAATCGAATGGGTTCTGTACATTGTACACCTTCCCGCACCC-AAGGGCACCGAGCAACC 26200172 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 ||| | || |||||||||||| | |||| | |||||| || | | || Sbjct 26200173 TATCAGCAACAAACTCAATGTACTGACTCATCAAGGCCCCGTTCATCCCCACCAACGCAC 26200232 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || |||||||| ||| |||| || |||| ||||||||||| || || || || | Sbjct 26200233 AAGGAAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACAGCATCGCGCACAATCTCCC 26200292 Query 127470 GAATAGTGTCCACCCCAGGTCTATTG---CGTAAAGTCTTGAAGAGTTCCACAGCAAACT 127526 | | | || | || ||| || | | | | |||| ||| || | Sbjct 26200293 TCAC---GCGCTCCTCGGGGAGCTTGGTCCGCATAATAGAGTAGAGCAGGCAAGCGAAGT 26200349 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | |||||||||||||| |||||||||||||| || ||||| || |||||||||| Sbjct 26200350 CGCAATGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAAGTGAGTCCTGGCATGA 26200409 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | ||||| ||||| | |||||| || | ||||| || ||||||||||| ||||| | Sbjct 26200410 GGCCCCGTTTCTTGAGCCAGAAGATGGAGCAAAAGCTTCCGGAGAAGAAGATACCCTCGA 26200469 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 | || || || || | || |||||||| ||||| Sbjct 26200470 CGCAGGCAAAGGCGACGAGGCGCTCGGCGAAGGA 26200503 Score = 132 bits (146), Expect = 6e-26 Identities = 374/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 |||||||| || ||||| || |||||||| || ||||| | ||| ||| |||||| Sbjct 34261625 TAGTCCCCAACGCGCTTTTCAAAGAAGTTAGTTTTCCCCTGGAGAGATATAAGCTCCATC 34261566 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC--CCAATCTGTTTGAGGAGAC 127349 ||||||| || |||| || || | | | | |||| | || || | Sbjct 34261565 CAATCAAAGGGATTCT--GAACACCGTACACCTTCCCGCATCCAAGCGCACCCAGTAGCC 34261508 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||||| ||| ||||||| |||| | |||| || |||||| || | | || Sbjct 34261507 GATCCGCGACAAACTCAATATACTGACTCATCAATTCCCCGTTCATCCCCACCAACGCAC 34261448 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || |||||||| | | ||| || |||| ||||| || ||||| || || || | | Sbjct 34261447 AAGGAAGCGCGTCGCACACAAACTCCCTCTCTATGTCAACCGCTTCGCGCACAATCTCCT 34261388 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGC---GTAAAGTCTTGAAGAGTTCCACAGCAAACT 127526 | ||| | | | || | | | || | ||||| ||| || || | Sbjct 34261387 TCACGCGTTCCTCGGTGAGCTTCTTCCTGAGGAGAGAGTACAAGAGG--CAC-GCGAAGT 34261331 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| || || || || || ||||||||||| || |||||| ||||| ||||| | Sbjct 34261330 CGCAGTGAAGCCCTTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGACCGGGCATCA 34261271 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 || |||||||| | ||| || |||| || || ||| ||||||||||| ||||| | Sbjct 34261270 AGCCACGCTTCTTGAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATTCCCTCAA 34261211 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCA 127706 | || ||||| || | || |||||||| |||||| || | | ||| | ||| || Sbjct 34261210 CGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGG---TGGCATCGATCCAGCGCA 34261154 Query 127707 TCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 127766 ||||| || ||||| || ||| ||| |||| ||| | || || || || | | Sbjct 34261153 AGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAACAGGTGAT 34261094 Query 127767 TCTTTTCTGATGGA-TCTTTGATGTA 127791 ||||||| | |||| ||||||||||| Sbjct 34261093 TCTTTTC-GGTGGAGTCTTTGATGTA 34261069 >seq182 Length=1065506 Score = 107 bits (118), Expect = 2e-18 Identities = 277/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 ||||| || ||| | ||| || || || ||||||| ||| ||||| | || || Sbjct 180405 TCAAGAATGTCAGCCCTGTTAGTAGCTGCAATGACAATGATACCCGTATTACCCTCAAAT 180464 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | | Sbjct 180465 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 180521 Query 12855 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 ||| || | || | |||| | || || || |||||||| |||| ||||| || || Sbjct 180522 CCAATTCCAGTACCCCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 180581 Query 12912 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 180582 GGAGCATTCTCTTTGGC--CTTCTTGAATAAATCGCGGACTCGGGAAGCACCAACACCAA 180639 Query 12970 CAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCC 13028 |||||||||||||||| | | | | | |||| | || ||||| | |||||| Sbjct 180640 CAAACATCTCCACAAACTCAGAACCTG-AGATTGAAAAAAATGGGACACCTGCTTCACCT 180698 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCA 13088 || || || || | || |||||||| || || || || | ||||| |||| Sbjct 180699 GCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACCT 180758 Query 13089 CGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCAC 13144 ||| || | || ||| || | | | |||||| | ||||||||| ||||| Sbjct 180759 TTTGGTATGCGAGCCCCAACAGCAGTGAATCTCTCGGGCTTTTTAAGAAATTCCAC 180814 >seq9 Length=31747250 Score = 89.7 bits (98), Expect = 6e-13 Identities = 215/318 (68%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||| |||| || || || ||||| ||||| | ||||| || | | Sbjct 3997752 AACCCATCCATCTCCGTCAGAAGCTGGTTAATGGTCTGTTCCCTCTCATCGTTGCCA--C 3997695 Query 12852 ATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | | | ||||| | | ||| | || ||||||||||| || ||||||||||| || | Sbjct 3997694 CTCCAAGCCCCGCCCCTCTCTGCCTCCCCACGGCGTCAATCTCATCAATGAAAACAATGC 3997635 Query 12910 ACGGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||| || ||| | | | ||||| | ||| | ||| ||| ||||| || ||| Sbjct 3997634 ACGGCGCCTTATTCTTCGCCTTC-TCAAACAAATCCCTCACCCTCGACGCACCAACCCCC 3997576 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||||| |||||| || | | || | || || || || || | ||| ||| Sbjct 3997575 ACAAACAGCTCCACGAATTCCGAAGCCGCGCACGAGAAAAACGGCACTCCCGCTTCCCCC 3997516 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCA 13088 || | || | || || || |||||||| || || ||| |||| | |||| | |||| Sbjct 3997515 GCCACAGCCCTAGCTAGAAGCGTCTTCCCGGTTCCCGGTGGCCCCACCAGAA-GACACCC 3997457 Query 13089 CGT-GGGATCCTGGCACC 13105 | | || ||| | ||||| Sbjct 3997456 CTTCGGAATCTTCGCACC 3997439 >seq5 Length=30687117 Score = 82.4 bits (90), Expect = 9e-11 Identities = 97/130 (75%), Gaps = 6/130 (5%) Strand=Plus/Plus Query 177711 CGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 177770 ||||| ||||| | |||| ||||||| || | ||||||||||||||| || ||||||| Sbjct 612322 CGATGACGAACTCGGTGGAGAAGATGTTGGTGAGCTTGGCACCGTAGCCGTTACGTCCAC 612381 Query 177771 CAACAATTCTCTTCTT---GTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGG 177827 | | ||||||| |||||| |||||||| | || ||||| | ||| || ||| Sbjct 612382 ---CGGTGGTCTTCTTGACGTTGTCGTCGTAGTTGCTGCTAGTGAGCAAGTGGCCGAAGA 612438 Query 177828 TAAGTTCTGG 177837 | ||||| || Sbjct 612439 TGAGTTCAGG 612448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613220577105000