Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq109 82.4 5e-11 >seq1 Length=42234885 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | ||| ||||| || || || ||||| || Sbjct 6125529 CCTCCACGAAGACGCAATACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGCA 6125588 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| |||||||| ||||| |||| || || | ||||||||| | || Sbjct 6125589 AGAGTCCTCCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 6125648 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| |||||| || | | | | ||| |||| |||||| || Sbjct 6125649 ATTCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTATCAATTGTATCTGAGCTTTCAACC 6125708 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || || || |||||||| || || ||||||||||| Sbjct 6125709 TCCAAAGTGATAGTCTTCCCTGTTAAAGTCTTCACAAAGATCTGCAT 6125755 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | || ||| ||||| | ||| | |||| || || || || |||||||| ||| Sbjct 6125757 CCTCCCCTCAGACGAAGTACAAGATGAAGAGTGGACTCCTTCTGAATGTTATAATCAGCC 6125816 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| || | || || || ||||||| || | ||||| || | || Sbjct 6125817 AGAGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGA 6125876 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| || ||||| ||| || || | | | | ||||||| || ||||| Sbjct 6125877 ATGCCCTCCTTGTCCTGTATCTTGGCCTTGACATTGTCAATCGTGTCTGAACTCTCCACC 6125936 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||||||||| || || | || || ||||| |||||||| Sbjct 6125937 TCCAAAGTAATTGTTTTTCCAGTAAGGGTCTTGACGAAAATCTGCAT 6125983 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || || || || || ||||| ||| |||| |||||||||||||| |||| Sbjct 37706527 TTCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAA 37706586 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||| | | ||||||||| | || | ||| || ||||| || ||| ||| | | Sbjct 37706587 AATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCTTTCACATT 37706646 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | ||| || | ||| ||||| ||||| ||||| || || || || | ||| || || Sbjct 37706647 ATCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCAC 37706706 Query 39708 GAAGATCTGCAT 39719 || |||||||| Sbjct 37706707 AAATATCTGCAT 37706718 >seq109 Length=622178 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||| ||| | ||| || || || || || || || ||| Sbjct 289697 CCTCCACGGAGACGGAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 289756 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| ||| |||||| | || || ||||||||||| || | || Sbjct 289757 AGGGTGCGACCATCCTCCAGTTGCTTCCCGGCGAAGATCAAACGCTGCTGGTCTGGTGGG 289816 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTAATCGTCG-CTACTGTGTCTGCGCTTTCC 39669 | ||||| ||||| | | |||| | |||| ||| | | | ||||| | || ||| Sbjct 289817 ATCCCTTCCTTGTC-CTGAATTTTGGCCTTTA--CGTTGTCGATGGTGTCGGAACTCTCC 289873 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | ||| || || ||||| || || || || |||||||| ||||| Sbjct 289874 ACCTCGAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 289923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347211370433375