Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 >seq1 Length=42234885 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | || | ||||||| || | || | | |||||| ||||||||| Sbjct 1930103 CCCCCTTGATCCACGTAACGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACCA 1930044 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| || || || ||||| || | || | ||||| || ||| Sbjct 1930043 TTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGAA 1929984 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || ||||| || ||| || | ||||||| || | || ||||| ||| Sbjct 1929983 ACACCAATTCCACCGGCTGATTTGCTAATGATAGCACACTCCTTCAAAGTGTCATATATT 1929924 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || ||||||||||||||| |||| Sbjct 1929923 CCCTCTATACTATCATCTTTCAT 1929901 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||||||||| || || ||||| || ||| || | ||||| || ||||| || Sbjct 40004521 ACAAGCAAAATCACAGTGAAGACCCTCATCCCTAGAGATTAGCTCATTTGAGAATGTCAA 40004462 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGA 19058 ||| |||||||||||||| ||||| | ||||||||| || Sbjct 40004461 ACCTGGCATCAGTCCTCTCTTTTTAAGCCAGAATATGGA 40004423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561846189795000