Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq37374 522 8e-144 seq6 183 9e-42 seq5 96.9 1e-15 >seq37374 Length=151683 Score = 522 bits (578), Expect = 8e-144 Identities = 708/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| || |||||||| || || || ||||| |||||||| |||||||| || | || Sbjct 3330 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 3389 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 || ||||||| ||| |||||||| || | || | || | |||||| || || Sbjct 3390 GCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACGGAT 3449 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| ||||| || || | || |||||||||||| || || | |||||||| | Sbjct 3450 TGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 3509 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| ||||||||||||||| ||| ||| || || Sbjct 3510 CAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 3569 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 3570 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGTT 3629 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || |||||| | || ||||| | Sbjct 3630 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCTG 3689 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || |||||||| Sbjct 3690 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 3749 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||||| | ||| || || ||||||||||| ||||| || || |||||||| ||| Sbjct 3750 CCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 3809 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||||||||||||||| || ||||| || |||||||||||||| || || || ||||| Sbjct 3810 ATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTGA 3869 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 |||| ||| |||| ||||| |||||| || ||||||||||| |||||||| || ||| Sbjct 3870 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACA 3929 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAA 26109 ||||| || | ||| || || | | ||||||||||||| | || |||| || || Sbjct 3930 GCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAGCAA 3989 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 ||| | || | | ||||| | ||||| |||| ||| || || ||||| || ||| Sbjct 3990 GCT---ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAAC 4046 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 || || || | | || |||||||| || || || || || | ||| || || ||| Sbjct 4047 CATTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCAGAA 4106 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || | || || || || ||||| ||||||||||| |||| | ||| || |||||| Sbjct 4107 GTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 4166 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 |||||||||||||| ||||| || ||||| ||||| | ||| || || | |||| | | Sbjct 4167 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAA 4226 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| || || | | ||| ||||| | || |||||||| || | || || || || Sbjct 4227 GTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTT 4286 Query 26410 TTTGTACTTGTAACCCAGTCACATAA 26435 | || || || | ||| | ||| || Sbjct 4287 TCGGTGCTGGTTATCCAATTACAGAA 4312 >seq6 Length=19356003 Score = 183 bits (202), Expect = 9e-42 Identities = 236/326 (72%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 ||||| || | ||| || || || || ||||| |||| ||| |||||||| || | || Sbjct 3411201 GCTAAATCTAAAGGCAAATTATGAGCATTACGTTCATACATTACTTCCATACCAAGGTTA 3411142 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 || ||||||| ||| |||||||| || | || | || | ||||| || || Sbjct 3411141 GCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAATTACGGAT 3411082 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| ||||| || || | || ||| |||||||| || || | |||||||| | Sbjct 3411081 TGGTTGAAATTAAAACCATTTAAGTTGAAAACCATAGTGCTGATACCTAAAGCGGTAAAC 3411022 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | | ||||||||||| ||||||||| ||||| ||| ||| || || Sbjct 3411021 CAAATACCTACTATAGGCCAAGCAGCTAGGAAGAAACGTAAAGAACGAGAATTGTTGAAA 3410962 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || ||||| |||||||| | || ||||| ||| ||||||| || ||||| ||||| || Sbjct 3410961 CTTGCATATTGGAAGATCAATCGGCCAAAATAGTCATGAGCAGCTACAATATTATAAGTT 3410902 Query 25753 TCTTCTTCTTGGCCGAATTTATATCC 25778 ||||||||||| || ||||| || || Sbjct 3410901 TCTTCTTCTTGACCAAATTTGTAACC 3410876 >seq5 Length=30687117 Score = 96.9 bits (106), Expect = 1e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 25623 AGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCT 25682 |||||||| ||| || | || ||||||||||| || |||||||||||| ||| Sbjct 28538898 AGCGGTAAACCAAATACCTACTACAGGCCAAGCAGCTAGAAAGAAATGTAAAAAACGAAA 28538839 Query 25683 ATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 25742 | |||| || || | ||| |||||||| | || ||||| || |||||||| | |||| Sbjct 28538838 ACTATTGAAACTTGTATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGTTTCAAT 28538779 Query 25743 GTTATACGTCTCTTCTTCTTGGCCGAATTTATATCC 25778 ||||| || ||||| ||||| || ||| | || || Sbjct 28538778 ATTATAAGTTTCTTCCTCTTGACCAAATCTGTAACC 28538743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151926140965500