Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq3 86.0 5e-12 seq109 84.2 2e-11 >seq1 Length=42234885 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||||||||| || || ||| ||||| || || || ||||| | || | || Sbjct 37702539 AGCCTCAACACCAAGTGCAGAGTGGATTCTTTCTGGATGTTATAATCTGCAAGGGTACGC 37702598 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| || |||| ||| || |||| || | ||| ||| Sbjct 37702599 CCATCTTCCAACTGCTTCCCAGCAAAGATAAGTCTCTGCTGGTCCGGTGGGATGCCTTCC 37702658 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| |||||| | | || || || || ||||||| || Sbjct 37702659 TTGTCCTGAATCTTTGCCTTTACATTGTCAATAGTGTCAGAGCTTTCAACCTCCAAAGTT 37702718 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| || |||||||||||||| Sbjct 37702719 ATGGTTTTCCCAGTTAAAGTCTTCACAAAAATCTGCAT 37702756 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||||| ||| | |||||| || || ||| ||| || |||||||||||||| | Sbjct 37712881 CCACCCCTTAACCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCA 37712940 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | || || | ||| ||||| ||||| ||||| | || ||||||| || Sbjct 37712941 AGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGG 37713000 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| ||||| ||||| || ||| | | | | || |||| || || Sbjct 37713001 ATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACT 37713060 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || ||||||||||| ||||| ||||||||| Sbjct 37713061 TCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCATC 37713108 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| ||||| || | | | ||| | || ||||| || || || ||||| Sbjct 37706528 TCCTTCTGAATGTTGTAGTCTGCCAAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAA 37706587 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | |||| |||||||||||| ||||||| ||| ||| | Sbjct 37706588 ATAAGCCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCTTGAATCTTTGCTTTCACATTA 37706647 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||||| ||||| || ||||| |||| ||| || ||| Sbjct 37706648 TCAATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTCTTTCCTGTCAGAGTCTTCACA 37706707 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 37706708 AATATCTGCAT 37706718 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||| | || || ||| || ||||| || |||||||| | Sbjct 37707403 GCCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCCGC 37707462 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| | || || | |||||||| ||||| || |||| ||| || || | || Sbjct 37707463 AAGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGG 37707522 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||||| ||| || | | | | || || | || || Sbjct 37707523 GATACCCTCCTTGTCTTGAATCTTTGCTTTCACGTTATCAATGGTGTCGGAGGATTCAAC 37707582 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || ||||| || ||||||||||| || || ||||||||| Sbjct 37707583 CTCAAGGGTGATGGTTTTGCCGGTCAAAGTTTTCACGAATATCTGCATC 37707631 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||| ||||| || | | | ||| | || ||||| ||||| || ||||| Sbjct 37712233 TCTTTCTGAATGTTGTAGTCTGCCAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAA 37712292 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | || | |||||||||||| ||||||| || ||| | Sbjct 37712293 ATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATTA 37712352 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||||||||| ||||| ||||| || |||| ||| || ||| Sbjct 37712353 TCAATTGTATCAGAGCTTTCCACCTCCAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACA 37712412 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 37712413 AAAATCTGCAT 37712423 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| ||||| || | || ||| || || ||||| ||||| | || ||| Sbjct 37702995 AGCCTCAAAACCAAGTGCAAAGTAGACTCCTTCTGGATATTATAATCCGCAAGGGTTCTT 37703054 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || || ||||| || || | ||| ||||| | ||||| |||||| Sbjct 37703055 CCATCTTCAAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCGGGGGGAATACCCTCC 37703114 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| ||| | | | | ||||| ||||||||||| ||| Sbjct 37703115 TTATCCTGAATCTTGGCTTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTA 37703174 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||||||| || ||||| || ||||| Sbjct 37703175 ATAGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 37703212 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||||||||| || || || || || || || || ||||||| || |||| Sbjct 37706729 AGCCTCAACACCAAGTGCAGAGTAGATTCCTTCTGGATGTTATAATCAGCAAGGGTTCGC 37706788 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| || || | || || || | |||| ||||| Sbjct 37706789 CCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGAATCCCCTCT 37706848 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| |||||| | | | | || || || ||||||| ||| Sbjct 37706849 TTGTCCTGAATCTTTGCCTTTACATTATCAATGGTATCAGAGCTTTCAACCTCCAAAGTA 37706908 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || ||||||||||| ||||| Sbjct 37706909 ATGGTCTTTCCAGTCAACGTCTTTACAAAAATTTGCAT 37706946 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| || | || | ||||||||| || ||| ||| || |||||||||||||||| Sbjct 37707175 GCCGCCTCTCAAACGAAGCACCAAATGGAGGGTGGACTCCTTCTGAATATTGTAATCAGC 37707234 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || ||| | || || | || || || || || ||||| | ||| || || | || Sbjct 37707235 AAGGGTTCTTCCATCCTCGAGTTGTTTCCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGG 37707294 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||| ||||| ||||| |||||| | | | | ||||| ||| || Sbjct 37707295 GATGCCCTCTTTGTCTTGGATCTTGGCCTTTACATTATCAATGGTGTCTGAACTCTCGAC 37707354 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | ||||| ||||| || |||||||| || ||||| || ||||| Sbjct 37707355 CTCAAGGGTAATGGTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 37707402 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 |||||| || || || ||| || |||||||||||||||| || | | | || || Sbjct 37712670 CACCAAGTGCAGGGTTGACTCCTTCTGAATATTGTAATCAGCAAGGGTCCTTCCATCCTC 37712729 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | || ||||| || || || || | ||| ||||| | || | ||||| ||||| Sbjct 37712730 AAGTTGTTTACCAGCGAAAATAAGCCTCTGCTGATCAGGAGGGATTCCCTCTTTGTCTTG 37712789 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||| || ||| | | | | ||||| ||||||||||| || || ||||| Sbjct 37712790 GATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTTATGGTTTT 37712849 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| |||||||| ||||||||||||||||| Sbjct 37712850 TCCAGTCAAAGTCTTTACAAAAATCTGCAT 37712879 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||||||||| || | | | ||| | || ||||| ||||| || ||||| Sbjct 37702338 TCCTTCTGAATATTGTAGTCTGCCAAGGTACGACCATCCTCCAATTGCTTCCCAGCAAAA 37702397 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | || | ||||||||||| ||||||| || ||| | Sbjct 37702398 ATAAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTA 37702457 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||||| ||||| ||||| || |||| ||| || ||| Sbjct 37702458 TCGATTGTATCAGAGCTCTCCACCTCCAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACA 37702517 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 37702518 AATATCTGCAT 37702528 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || | ||| || ||| ||| || ||||| || ||||||| Sbjct 6125757 CCTCCCCTCAGACGAAGTACAAGATGAAGAGTGGACTCCTTCTGAATGTTATAATCAGCC 6125816 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || || | |||||| || ||||| |||| | || || || | ||| Sbjct 6125817 AGAGTACGTCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGA 6125876 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | ||||| ||||||| Sbjct 6125877 ATGCCCTCCTTGTCCTGTATCTTGGCCTTGACATTGTCAATCGTGTCTGAACTCTCCACC 6125936 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| |||||||| || | || || || ||||||||||| Sbjct 6125937 TCCAAAGTAATTGTTTTTCCAGTAAGGGTCTTGACGAAAATCTGCAT 6125983 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | || | ||||| || || ||| || |||||||| |||||||||| Sbjct 37703213 GCCCCCCCTCAAACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATCAGC 37703272 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || ||| |||| || | || ||||| || || ||||| | ||| ||||||| || Sbjct 37703273 AAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGG 37703332 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || || ||||| ||||| || ||| | | | | || || | ||||| Sbjct 37703333 GATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCGGAGGATTCCAC 37703392 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || |||||||| ||||||||||| || || || |||||| Sbjct 37703393 CTCGAGTGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCATC 37703441 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | ||||||||| || ||| || || || || || ||||||| || | || Sbjct 37702767 AGCCTTAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAATCAGCAAGGGTACGC 37702826 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || | || ||||| | |||| ||||| Sbjct 37702827 CCATCTTCTAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGTGGAATCCCCTCT 37702886 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| |||||| | | | | || || || ||||||| ||| Sbjct 37702887 TTGTCCTGTATCTTAGCCTTTACATTATCAATGGTATCAGAACTTTCAACCTCCAAGGTA 37702946 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||||||||| ||| || |||||||| ||||| Sbjct 37702947 ATGGTTTTTCCCGTCAGAGTCTTGACAAAAATTTGCAT 37702984 >seq3 Length=41204908 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || || ||||| || | || | ||| |||| || | |||| Sbjct 288776 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGC 288717 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || || ||||| ||||| | || | |||||||||||| ||||| Sbjct 288716 TTTCCTGCGAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTGTCCTGGATCTTG 288657 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | || || | ||||||||| | || || || || ||||| Sbjct 288656 GCCTTGACATTATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTA 288597 Query 48744 AAAGTTTTTACAAAAATCTGCATCG 48768 | ||||| || || |||||||||| Sbjct 288596 AGGGTTTTCACGAATATCTGCATCG 288572 >seq109 Length=622178 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || |||||||| |||| || | | | || ||||| ||| Sbjct 289265 TGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGTCCTCCCATCTTCCAATTGC 289324 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || ||||| | ||| || |||| |||| ||||||||||| ||| || Sbjct 289325 TTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGTGGAATTCCCTCCTTGTCCTGAATTTTC 289384 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | || || || ||| ||||||| || || || || || ||| Sbjct 289385 GCCTTCACATTGTCAATAGTGTCAGAACTCTCAACCTCCAGAGTGATTGTCTTCCCAGTC 289444 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 || || || ||||||||||||||| Sbjct 289445 AAGGTCTTCACAAAAATCTGCATC 289468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380764079947125