Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq37374 533 4e-147 seq6 199 1e-46 seq5 80.6 8e-11 >seq37374 Length=151683 Score = 533 bits (590), Expect = 4e-147 Identities = 713/986 (72%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| |||||| ||||| |||||||||||||| || ||||| ||||| | |||||||| Sbjct 3329 AGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTT 3388 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||||| ||| | | |||||||| ||| || || | ||| | | || | ||| Sbjct 3389 AGCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGACTATCAACTACGGA 3448 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| || || ||||| | || |||||||||||| ||| || | || ||||| Sbjct 3449 TTGGTTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAA 3508 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || ||||||||||| | ||||||||||| | | |||||| || Sbjct 3509 CCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAATTGTTGAA 3568 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 || ||||| |||||||| | || ||||| || |||||||| || ||||||||||| || Sbjct 3569 ACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAAGT 3628 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||| ||||| |||||| | || || | || || ||| || || ||||| || Sbjct 3629 TTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCGGATTCATTTTCTGTGGTTTCCCT 3688 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | || ||||||||| ||||| | || |||||||| Sbjct 3689 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATAC 3748 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || ||||||||||| ||||| || || || || ||||| Sbjct 3749 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATAC 3808 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| |||||||||||||| ||| || |||||||||||||| || || || ||||| Sbjct 3809 AATCATAAAATTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAGCTTCCTTG 3868 Query 18374 TCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 |||| |||||| | | ||||| || | || | || ||||| || || || ||||| ||| Sbjct 3869 ACCAATAGGATAGATCAAGAAA-ACAGCAGTA-GCGGCTGCAACAGGAGCTGAATATGCA 3926 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 ||| |||||| || |||||||| || | | ||||||||||||| | || |||||||| Sbjct 3927 ACAGCAATCCAAGGACGCATACCCAGACGAAAACTAAGTTCCCACTCACGACCCATGTAG 3986 Query 18492 GCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAAC 18551 || | || | | ||||| | ||||| |||| ||| || || ||||| |||||| Sbjct 3987 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAAC 4046 Query 18552 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 18611 || || || | | || |||||||| || || || || || | ||| || || ||| Sbjct 4047 CATTCATCAACAGAAGCTGCTTCCCATATCGGATAAAAATGCAAACCTATAGCCGCAGAA 4106 Query 18612 GACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGC 18671 | || | || || || || ||||| ||||||||||| |||| | ||| || |||||| Sbjct 4107 GTAGGAATAATCGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 4166 Query 18672 TCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTA 18731 |||||||||||||| || || || ||||| ||||| | ||| || || | |||| | | | Sbjct 4167 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATAAAAGCGATAATAAATACAGAA 4226 Query 18732 GCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTG 18791 | ||| || || | | ||| ||||| | || |||||||| || | ||| || || || Sbjct 4227 GTTGCAGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTT 4286 Query 18792 TTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||| | ||| || Sbjct 4287 TCGGTGCTGGTTATCCAATTACAGAA 4312 >seq6 Length=19356003 Score = 199 bits (220), Expect = 1e-46 Identities = 306/434 (71%), Gaps = 8/434 (2%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||||||||| || || |||||||||||||| || | ||| ||||| | |||||||| Sbjct 3411202 AGCTAAATCTAAAGGCAAATTATGAGCATTACGTTCATACATTACTTCCATACCAAGGTT 3411143 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTA-CAAT-- 17950 ||||| ||| | | |||||||| ||| || || | ||| | ||| |||| Sbjct 3411142 AGCTCGGTTAATAATATCAGCCCAGGTATTTATTACACGACCTTGA----CTATCAATTA 3411087 Query 17951 -GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 18009 |||||||||||| || || ||||| | || ||| |||||||| ||| || | || || Sbjct 3411086 CGGATTGGTTGAAATTAAAACCATTTAAGTTGAAAACCATAGTGCTGATACCTAAAGCGG 3411027 Query 18010 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGT 18069 ||| ||| || | | ||||||||||| | ||||||| ||| | | ||||| Sbjct 3411026 TAAACCAAATACCTACTATAGGCCAAGCAGCTAGGAAGAAACGTAAAGAACGAGAATTGT 3410967 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 | || || ||||| |||||||| | || ||||| ||| ||||||| || |||||||||| Sbjct 3410966 TGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAGTCATGAGCAGCTACAATATTAT 3410907 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | || ||||||||||| |||||||| || || | || | | ||| || || |||| Sbjct 3410906 AAGTTTCTTCTTCTTGACCAAATTTGTAACCTTCATTTGCAAATTCATTTTCTGTGGTTT 3410847 Query 18190 CTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 18249 | || || | ||||| || | || | ||||| | ||||| | || |||| Sbjct 3410846 CCCTTATCAAACTAGAAGTTACCAAGGAACCATCCATAGTACTGAATAGGGAGCCGCCGA 3410787 Query 18250 ATACCCCTGCAACA 18263 |||| || || ||| Sbjct 3410786 ATACACCAGCTACA 3410773 >seq5 Length=30687117 Score = 80.6 bits (88), Expect = 8e-11 Identities = 98/134 (73%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || ||||||||||| | |||||||||| | | | | || || || | ||| ||| Sbjct 28538876 ACAGGCCAAGCAGCTAGAAAGAAATGTAAAAAACGAAAACTATTGAAACTTGTATATTGG 28538817 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 ||||| | || ||||| || |||||||| | |||||||||| || ||||| ||||| Sbjct 28538816 AAGATCAATCGGCCAAAATAACCATGAGCAGTTTCAATATTATAAGTTTCTTCCTCTTGA 28538757 Query 18147 CCAAATTTATATCC 18160 |||||| | || || Sbjct 28538756 CCAAATCTGTAACC 28538743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151251240638250