Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 127 3e-24 seq25 105 9e-18 seq3 89.7 7e-13 >seq1 Length=42234885 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | ||| | ||||| | ||| | || | |||||| |||| |||||| Sbjct 1930104 TCCCCCTTGATCCACGTAACGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACC 1930045 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| || ||||| ||| | || |||||||| || ||| Sbjct 1930044 ATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 1929985 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||| || || ||| || | |||||| ||||| ||||||||||| Sbjct 1929984 AACACCAATTCCACCGGCTGATTTGCTAATGATAGCACACTCCTTCAAAGTGTCATATAT 1929925 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||||||| ||||||||| ||||| | ||| || || ||| Sbjct 1929924 TCCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 1929882 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 |||||||| || || | || |||||||| ||||||||||| || ||| | ||| | | Sbjct 1929747 GTTCCCGCGTTGAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATCAGGTGG 1929688 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| | ||| | || || || || ||||||||| | ||||| | ||||||| Sbjct 1929687 TAAGTTTTGACAGCAGCATCAATGTCTTCCTTATGAATTCCAACAGCGACCCTCATCAAC 1929628 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || || |||| ||| || || | | || || ||||| || | || || Sbjct 1929627 ATGTGTTGTGGTCTTTCCACAACCTTGCCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 1929568 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || |||||||| | || |||||| || || || || || Sbjct 1929567 GTTTTGAAACCAAAATAATCATAGTCAAAGTCCCTATCATAGATTAT 1929521 >seq25 Length=312266 Score = 105 bits (116), Expect = 9e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | |||||| | ||| | || | | ||| |||| ||| || Sbjct 242285 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGTAACATTGGAACAATGCC 242226 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 || || | |||||||| ||| ||||||||| || | || ||||| || | ||| Sbjct 242225 GTTGGACGTCCCATTTGTCCCACGAATATAACTGCCGGTAGCACGAATGTTGTGGACAGA 242166 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || ||| || | |||||| ||||| || |||||||| Sbjct 242165 GACACCAATTCCTCCAGCTGATTTGCTAATAATAGCACACTCCTTCAAAGTTTCATATAT 242106 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||||||||||||||| ||||| | ||| || || ||| Sbjct 242105 CCCCTCTATGCTATCATCATTCATGCACACAAGGAAGCAACTA 242063 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| ||||| || | |||||||||||||| ||||||||| || ||| | || | Sbjct 241928 AGTTCCAGCATTGAAAAGAGTAGGAGATGCGTGGGTGAACCATCGTTGAGACATCATGTG 241869 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| ||| | ||| |||||||| || || ||||| || | |||||| | |||||| Sbjct 241868 GTAAGTTCTGACAGCAGATTCTATGTCATCCTTGTGAATCCCAACCGCGACTCTCATCAA 241809 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | ||| || || | | || || ||||| || | || || Sbjct 241808 CATGTGTTGCGGCCTTTCCACAACCTTCCCTTGAACCTTTAAGAGGTAAGACCTCTCAAG 241749 Query 70170 AGTTTTAAACCCAAAATA 70187 ||||| ||||||||||| Sbjct 241748 GGTTTTGAACCCAAAATA 241731 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||||||| | || ||||| ||||||||||| | | ||||||||||| || Sbjct 244224 TAAAACTCTACGACTATAGATATTTGAAGTATATGGTTCAAAGCACTCATTATTTCCAAG 244165 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCAT 68851 ||| ||| ||| |||||||| |||||||| ||||| | | |||||| | ||||| Sbjct 244164 AATCTGACTAGTGGATGCAGTAGGCATAGGAGCCACGAGAAGTGAATTTCTCACACCAT 244106 >seq3 Length=41204908 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || || || ||||||| || | |||||| || || ||||| Sbjct 34261341 GCACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 34261282 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| | |||||||| |||||||||||||| | |||| ||| | || || |||| Sbjct 34261281 ACCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCG-AGCAGAAGCTGCCGGAGAAGA 34261223 Query 39735 AGATGCCTTCTAC 39747 |||| || || || Sbjct 34261222 AGATTCCCTCAAC 34261210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686587884795000