Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq8 87.8 1e-12 >seq1 Length=42234885 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 ||||||||||| ||||| ||| |||| |||||| ||||||| |||| | |||||| Sbjct 29904406 CAGTTTTACGTAGCAAATGGGGAATTGTCGTGTCAAATGTATCAGCGATCTGCGGACATG 29904347 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || ||||| || ||||| || || ||||||||| || || | |||||||| || Sbjct 29904346 GGCCTGGGGGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 29904287 Query 41199 GTT 41201 ||| Sbjct 29904286 GTT 29904284 >seq8 Length=30791815 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 ||||||||||| || || ||| | || |||||| ||||||| |||| | |||||| Sbjct 27451222 CAGTTTTACGTAGCAAAGGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATG 27451163 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || |||||||| ||||| || || ||||||||| || || | |||||||| || Sbjct 27451162 GGCCTGGGGGTCCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 27451103 Query 41199 GTT 41201 ||| Sbjct 27451102 GTT 27451100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397274955686875