Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq4 84.2 2e-11 seq11 82.4 8e-11 >seq3 Length=41204908 Score = 107 bits (118), Expect = 2e-18 Identities = 320/483 (66%), Gaps = 12/483 (2%) Strand=Plus/Plus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 ||| || || || | || || ||||| || || || ||||| | ||| ||||||| || Sbjct 26200381 TTCGTTGGAGAAAGTGAGTCCTGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATGGAGCA 26200440 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||| || ||||||||| || ||||| || ||||||||||| ||||| | ||||| Sbjct 26200441 AAAGCTTCCGGAGAAGAAGATACCCTCGACGCAGGCAAAGGCGACGAGGCGCTCGGCGAA 26200500 Query 74909 CGGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 | ||||| |||| ||||| | ||||| | || || ||| |||||| Sbjct 26200501 ---GGACTCGGAGGAGTCGATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGA-CGCAGG 26200556 Query 74966 G-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG-AGCTTG 75023 | | || || || || || ||||| | | |||||| ||| || || | | || || Sbjct 26200557 GAATGGTGTCAATGGCGTGAAAGAGACGGGTTTTCTCTACGGAGTCTTTTATGTAGGTT- 26200615 Query 75024 TCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTA 75082 || | | || |||| |||| || ||||| |||| | | ||| |||| | |||| Sbjct 26200616 TCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCGAT-AGCGATCTGGAAGCCGTA 26200674 Query 75083 GAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCAT 75142 || | || ||||| | | ||| || ||||| |||| | | | || || | Sbjct 26200675 AAAGGCGCGAGCCTCGGAGACCTGGACCTCCTTCATAAAACGGCCGGCAAGGTTTTCTAG 26200734 Query 75143 GACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202 ||||||||||| ||||||||||| || || || || ||| || |||||||| | Sbjct 26200735 TACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACATGGGTGACGAAATGGCGCTCGCC 26200794 Query 75203 GTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCA 75262 ||| || || ||| ||| | | | |||| || | || | |||||| ||||||| Sbjct 26200795 GTCGGTAAGAGTGTTCCAGTGACTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCA 26200854 Query 75263 GAA 75265 ||| Sbjct 26200855 GAA 26200857 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 36468685 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 36468626 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 36468625 TGAGCTACGAAAGCA 36468611 >seq4 Length=34671004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3048826 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 3048767 Query 79683 TTGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 3048766 CTGAGCTATGAAAGCA 3048751 >seq11 Length=26588826 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 26225671 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 26225612 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 26225611 TGAGCTATGAAAGCA 26225597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546960347525000