Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_029065.1 Length=98765 Score E Sequences producing significant alignments: (Bits) Value seq1272 852 0.0 >seq1272 Length=102696 Score = 852 bits (944), Expect = 0.0 Identities = 1072/1454 (74%), Gaps = 27/1454 (2%) Strand=Plus/Plus Query 2949 CCACCGGATCATATCGGCAATGATTGGATAGATATCGTTGTGACGTGTGCCGAATTTCAT 3008 ||| || ||||| || | || || |||||||| || ||||||||||| || |||||||| Sbjct 38088 CCAACGAATCATGTCACCGATAATGGGATAGATGTCATTGTGACGTGTACCAAATTTCAT 38147 Query 3009 CCATTTGTTTGTTGTGTCATAGTGGCCGATGTCGCGGCTAACGTCGCCATTGTCTGGCAG 3068 |||| |||| ||||| || || |||||||| | || ||| ||||||||| Sbjct 38148 CCATCCGTTTTGCTTGTCAAAGCTTCCAATGTCGCGTGTGGTGTTGCCGCCGTCTGGCAG 38207 Query 3069 ATAGTCACGCAAGCCGGTCAACTTCGCTTTGATGCGTTCTTGTTCGGTCAACTCATAGAA 3128 ||||||||||| || | | ||| ||||||||||||||||| ||||||| |||||| | Sbjct 38208 GTAGTCACGCAACCCTGCAAGCTTGGCTTTGATGCGTTCTTGCTCGGTCATTTCATAGTA 38267 Query 3129 ACGCCATACCGGGTTAGTGTGGCTGAAATTGA-CTTGTGACAGGTTGTGCAGAAGCTTTT 3187 |||||| ||| |||| |||||| || | | | ||| | | | ||||||||| | Sbjct 38268 ACGCCAAACCTTGTTACCGTGGCTAAAGTCTAGCAGGTGG-ATTTGATTCAGAAGCTTCT 38326 Query 3188 CCAAGTCTTCAGCGGCGTTTGCATCCCGGCGACGACCGAAACCCAAATCATACACAAGCT 3247 | | |||| | ||| | ||||| ||||| || ||||| |||||||| || | Sbjct 38327 CAAGCGCTTCCTGGCTGTTCTCGTCCCGCTTGCGACCAAAGCCCAAGTCATACACCAGTT 38386 Query 3248 TTGCAATGGCCTTGACGACGACAGGTTGAGCCAATACTGTGTTGGCCTTCGCCCCTTGCT 3307 | | |||||||||||| || || |||||||| | ||||| || |||||||||||||| Sbjct 38387 TAGAAATGGCCTTGACAACTACGGGTTGAGCAAGAACTGTTTTACTCTTCGCCCCTTGCT 38446 Query 3308 TGCCAAAGCCGGGAACGTTAGCGATAGCGCCCCACATACGGTAC-GCTGTAGCCTGTTTC 3366 |||||||| ||||| | ||| || | |||||| | |||| ||| | | || ||| Sbjct 38447 CACCAAAGCCCGGAACTTGAGCAATTTCCGACCACAT-CTGTACAGCTACATCATGCTTC 38505 Query 3367 TCTTCTACGTCTTTCGGCGTGGCACTGGCAATGCTGGTTTTGTTCAGGAACAGGATAGCG 3426 | ||| ||||| || || ||| | |||||||| || ||||| ||||||||| ||| Sbjct 38506 TGTTCAACGTCAGCAGGTGTTGCAGTTGCAATGCTAGTACGGTTCAAGAACAGGATTGCG 38565 Query 3427 TTAACCGCTGCCAAGTCTCGAAACGTCCAACGGCCAGTGTCCTTTTGCCAGTTGGATTGA 3486 || ||||| ||||| || |||||||| || |||||||| ||||| || | || Sbjct 38566 TTTGTTGCTGCTAAGTCCTTGAAGGTCCAACGACCTGTGTCCTTGTGCCAATTTGTCTGG 38625 Query 3487 TCACCGTCTACCACGTCTTCCCAATCCAGAATGTTAGGCAACAACTCATTCTGAATAAAT 3546 |||||||| ||||||||||||| | ||||||| ||||||| || | ||||| || Sbjct 38626 TCACCGTCCGCCACGTCTTCCCAGTTGAGAATGTCGGGCAACAGTTCCTGTTGAATGAAC 38685 Query 3547 TGGTTAACAGGGTTGGCACTATCGAATTTCAGTGCTAGACTGCGCTCCACTTTCTTAGAC 3606 | || ||||||| ||||| || || || ||||| || || ||| || ||||| | | Sbjct 38686 CGATTGGCAGGGTTCGCACTGTCAAACTTAAGTGCAAGGCTTTTCTCTACCTTCTTGGCC 38745 Query 3607 AGGTTGTTCAGGTCGTGGTACAATTGTTGTTCTTCCCGAACGCCTAGACCTAAGTGAATC 3666 | |||||||||||||||| ||||||| |||||||| | ||||||||||| ||||| || Sbjct 38746 AAGTTGTTCAGGTCGTGGAACAATTGGCGTTCTTCCTGTACGCCTAGACCCAAGTGGATT 38805 Query 3667 TCTACGGCGATCTTGCAAAAGCCGCGTGCAACTTCGTCGCATTCGTCCCACGCTGCAAGA 3726 || || |||||||| | || || | ||||||||||||||||||||||| ||| | || Sbjct 38806 TCAACAGCGATCTTACTGAACCCCCTGGCAACTTCGTCGCATTCGTCCCAAGCTTCTAGG 38865 Query 3727 ATGTCGTTTTCG-ATGATG-GCTTTAAAATCGCCTTCAAAGAGTTTCGGTTTACGTGGAT 3784 | || | || | | || |||||| || || ||||| ||||| ||| |||||| | Sbjct 38866 ACATC--TGCCGAAAGCTGCTCTTTAAGGTCACCATCAAACAGTTTAGGTCGACGTGGGT 38923 Query 3785 ACTTGCGGTTGAGCCTGATTTCAGTCAGGAACTCGAAAACCAAATCCATCGCATAGCGTC 3844 | || ||||| | | | ||| | ||||||||| || ||||| ||||| |||||||| | Sbjct 38924 ATTTCCGGTTAATGCGTACTTCTGCCAGGAACTCAAAGACCAAGTCCATGGCATAGCGAC 38983 Query 3845 TGTGCTGGCCGTCGATCACATACAGCAGGTCACGCTGGCCTAAGTAGACTTTGAAACAGG 3904 ||| || || ||||| ||||||| || ||||||||||||||| ||||| ||| | || | Sbjct 38984 GGTGTTGCCCATCGATTACATACAACATGTCACGCTGGCCTAAATAGACCTTGTAGCAAG 39043 Query 3905 CGGTTTCACCTTCGCTTTCCATGCGTCGGCCTTCGATACCAGCGCCGCCCGGTTCAACGG 3964 | |||||||| ||| |||| ||| | ||||| |||||| | |||||||||| | || Sbjct 39044 CTGTTTCACCATCGGAAACCATCCGTTGCCCTTCAATACCATCACCGCCCGGTTTACAGG 39103 Query 3965 TGCGAAGGTTGGCAATGATCGGCTGTAGGCTCATGTAGGTTTGTGGCCCCATAACCTTTT 4024 | ||||||||||||| ||||| || ||||||||||| || || |||||||| || | | Sbjct 39104 TTCGAAGGTTGGCAACAATCGGTTGCAGGCTCATGTAAGTCTGAGGCCCCATCACGTGCT 39163 Query 4025 GAAGCTCGTTCAAGGCTTCGCTTTCG-GGTTTG---TTGTTCTTGGCACGGTATTCGATT 4080 |||||| |||| ||| | || || ||| |||||| ||||||||| || Sbjct 39164 GAAGCT-GTTCTAGGACAAGTGACCGAGGCTTGCCAAAGTTCTT---ACGGTATTCAATG 39219 Query 4081 GCAGCGGCCACCAGACCACGCAAGATATATTTAGCGAGTCCTGTAGCGTGTGCCTCATTC 4140 || || |||| || ||||| | ||| || || || |||||||| |||||||| || || Sbjct 39220 GCGGCAGCCAGCAAGCCACGAAGGATGTACTTTGCCAGTCCTGTTGCGTGTGCTTCGTTG 39279 Query 4141 AAAGGCCGTTGAGTGGCTGGCGAGCCGTCCGGCTGCCGTTCGTTGGCGACTTTCGACATG 4200 | || || || ||||| || ||||| || | ||||| ||||| || || || |||||| Sbjct 39280 AGTGGTCGCTGTGTGGCGGGTGAGCCATCAGCTTGCCGCTCGTTCGCAACCTTGGACATG 39339 Query 4201 GCGTAAAAGTCTTTCATGGGGATCAGGGCCAGAAAGGTACGATGGCCGAGGTTGTGACCG 4260 ||| || |||||||| |||||||| |||| || || ||||| || || || ||||| Sbjct 39340 CTGTAGAAATCTTTCATCGGGATCAGAGCCATGAACGTGCGATGTCCAAGATTATGACCA 39399 Query 4261 ATGAACACCTTTTCAGGGCGTGCACTGGAATCCGCTTCTTTCAGCAGGTTGTCGATAGAG 4320 ||||| ||||||||||| || || | | ||| | || | ||||| |||||| Sbjct 39400 ATGAAAACCTTTTCAGGTCGAGCGTTTGTATCAGACTC---GACAAGGTTAGAGATAGAA 39456 Query 4321 GTGATTGGGGTTGGCAGACCTT---CGTTAGTGTGAGCAAACATGGT-GCATCTCCTAGA 4376 ||||| |||||||| ||||||| |||| | | ||||||||||| || ||||||| | Sbjct 39457 GTGATAGGGGTTGGGAGACCTTCAGCGTTTG---GTGCAAACATGGTGGCTTCTCCTAAA 39513 Query 4377 GGGTAGCCCGGTTG 4390 | || | |||||| Sbjct 39514 GTGT-GGGCGGTTG 39526 Score = 114 bits (126), Expect = 8e-21 Identities = 233/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 17521 TCATGCCTTTTTACCCCCTTCAGCCATACGGTTTTCGATTTTGTGGTCAGCACGTTTCGA 17580 ||| |||||||| || ||||| |||| |||||| || | ||||| || | || | | Sbjct 57795 TCACGCCTTTTTCCCACCTTCTGCCAGACGGTTCTCAACCTTGTGATCTGGTCGAATGGC 57854 Query 17581 GTTGTAGTACAGCTTCTCGATAATCGCACCAGCCAAGTCCCAACCTTCGTGCCCAGCAAG 17640 ||| | |||||||||| || || ||| | | |||| ||| || || ||| || Sbjct 57855 GTTAAAAGCTAGCTTCTCGACAACGGCCCCACCAATGTCCAGACCCTCATGGCCACACAG 57914 Query 17641 GTCGA--ATGCACGGATGATGGCGTCTGCCAGCTCCACTTCAGCCATTGGACGCTCTTTC 17698 || | |||| |||| | |||||||||||||||||| || ||| ||| | Sbjct 57915 ATCAAGGATGC--GGATCAGGGCGTCTGCCAGCTCCACCTCGATCATCTTACGATGAGGA 57972 Query 17699 AAGTGGTCATCCAGCAACCCTTTACGAACACCTTCAACAGCTTCGCTCACTTCAGAGTGA 17758 | | |||||||| || ||||| |||||| | ||| ||| |||||| ||| Sbjct 57973 AGTTTGTCATCCATCAGATTCTTACGGCAACCTTCCAGAGCCTCGGATACTTCACTGTGC 58032 Query 17759 ACCAGTGCCAGTTTGGACAGGATCAGGGTTACGTCACCGCGAGGATGTGCAACGCCTGTA 17818 ||||||||||| |||| |||||| ||| || ||||| | || | | | || || Sbjct 58033 ACCAGTGCCAGCTTGGCAAGGATCTCGGTCACATCACCTTGCGGCTTGAGATCACCCGTG 58092 Query 17819 GCGATGTTCTTCCACCAACCGGCTTCCACGTTACCACGATAGAT 17862 || | || ||||||| || |||| ||||| ||| |||||| Sbjct 58093 GCAAGATTGGTCCACCAGCCAGCTTTGACGTTGCCAGCATAGAT 58136 Score = 105 bits (116), Expect = 4e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 86500 TGTGTTTGGTGTGGGTTCTTTCACCTACCAGTGCAACACCCGTGACACCTTCGGTTTTGC 86559 ||||||||| | ||||||| ||||||||||||| |||||||| ||||| ||| | Sbjct 16647 TGTGTTTGGCATCGGTTCTTACACCTACCAGTGCCTGACCCGTGATGTATTCGGCTTTAC 16706 Query 86560 TGTGAAGGCAACCAACTCTGTCATCAATGGTGACGAAGTGGCAATCTTCAAAGACCCGAA 86619 ||| ||||||||| || | | || || || || | || |||| |||||| ||||| Sbjct 16707 TGTCAAGGCAACCCACACCCGTGTTAACGGCGAGGACATTGCTATCTACAAAGATCCGAA 16766 Query 86620 GACTGACAGCAAGAAGAA 86637 ||||||||| |||||||| Sbjct 16767 GACTGACAGTAAGAAGAA 16784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 315779294514250