Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq3 87.8 2e-12 seq5 82.4 7e-11 >seq1 Length=42234885 Score = 107 bits (118), Expect = 2e-18 Identities = 173/245 (71%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGT-AACACCAAATGTAGCGTGCTCTCTTTT 39099 || ||||||| || ||| |||| |||| | || ||||| || | || ||| || Sbjct 37702971 ACAAAAATTTG--CATGCCACCTCG-AAGCCTCAAAACCAAGTGCAAAGTAGACTCCTTC 37703027 Query 39100 TGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGA 39159 || ||||||||||| ||||| |||| | | || ||||||||||| || ||||| ||||| Sbjct 37703028 TGGATATTATAATCCGCAAGGGTTCTTCCATCTTCAAGCTGTTTCCCAGCAAAGATAAGC 37703087 Query 39160 CGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC 39219 | |||||| |||| ||| | | ||| || ||| || || ||||| | | | Sbjct 37703088 CTCTGCTGATCGGGGGGAATACCCTCCTTATCCTGAATCTTGGCTTTGACATTATCAATG 37703147 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 ||||| |||||| |||| || ||| |||| || |||| || || ||||||||| Sbjct 37703148 GTATCTGAACTCTCCACCTCCAAGGTAATAGTTTTCCCGGTCAAAGTCTTGACAAAGATT 37703207 Query 39280 TGCAT 39284 ||||| Sbjct 37703208 TGCAT 37703212 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || || || || | ||||| || || ||| || ||||| || || ||||| Sbjct 37703210 CATGCCCCCCCTCAAACGAAGAACCAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAATC 37703269 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| |||| | |||| ||||| ||||| || || || || || | |||||| || | Sbjct 37703270 AGCAAGGGTTCTTCCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGG 37703329 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | ||||||||| ||| || || | | | | |||||| || || Sbjct 37703330 AGGGATACCTTCTTTGTCCTGGATCTTAGCCTTCACATTATCAATGGTATCGGAGGATTC 37703389 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||| || | |||||| ||||||| |||| ||||| || ||||||||||||| ||| Sbjct 37703390 CACCTCGAGTGTGATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCATCTGTAC 37703446 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || ||||| || | |||||| || || ||| ||| || || ||||| ||||||||| Sbjct 37712881 CCACCCCTTAACCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGCA 37712940 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | || ||||||||||| || ||||| || || | ||||| || | || Sbjct 37712941 AGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGGG 37713000 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||||| ||| || |||| | | | || || ||| || || Sbjct 37713001 ATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTACT 37713060 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | || || | || || |||| ||||| |||||||| ||||||| Sbjct 37713061 TCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCATCT 37713109 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 || ||||| || || ||| || || ||||| |||||||| ||||| || | | |||| Sbjct 37712440 AAAACCAAGTGCAGAGTGGATTCCTTCTGTATGTTATAATCCGCAAGGGTCCTTCCGTCT 37712499 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 ||||||||||| || ||||| ||||| | |||||| || | ||| | | ||| || ||| Sbjct 37712500 TCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGGGATACCCTCCTTATCC 37712559 Query 39193 ATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| | | || ||| | | | | ||||| |||||| |||| || || | Sbjct 37712560 -TGAATCTTTGCTTTCACATTGTCAATTGTATCTGAACTCTCCACTTCCAAGGTTATGGT 37712618 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||| || || ||||| |||||||| Sbjct 37712619 CTTTCCTGTCAAAGTCTTGACAAAAATTTGCAT 37712651 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| ||||| || || ||||| ||||| || || | || || Sbjct 6126230 CACCAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGACCATCCTC 6126289 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 |||||||||||| ||||| || ||||| ||||||| ||||||| | | || ||||| Sbjct 6126290 AAGCTGTTTGCCAGCAAAAATGAGACGTTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCTT 6126348 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || || ||| | | | | ||||| ||| ||| || || | ||||| Sbjct 6126349 GAATCTTGGCTTTCACATTATCAATGGTATCTGAGCT---CTCTACTTCGAGAGTGATGG 6126405 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || || || ||||| ||||||||||||| Sbjct 6126406 TCTTACCGGTGAGAGTCTTAACGAAGATTTGCATCT 6126441 >seq3 Length=41204908 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| |||||| || || || || ||||| || || || |||| |||||||| Sbjct 288776 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTCAAGCTGC 288717 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || ||||||||||| || |||||| | || ||| |||||| ||| || Sbjct 288716 TTTCCTGCGAAGATGAGACGCTGCTGATCTGGTGGG-ATGCCCTCCTTGTCCTGGATCTT 288658 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | || || |||||||| || | ||||| | || ||||| Sbjct 288657 GGCCTTGACATTATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGT 288598 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 || ||||| || || || |||||| Sbjct 288597 AAGGGTTTTCACGAATATCTGCATC 288573 >seq5 Length=30687117 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || || || ||||| || || || |||| || ||||| Sbjct 9179510 TGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 9179451 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || ||||||||||||| ||||||| | || ||| || ||| ||| || Sbjct 9179450 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCCTCCTTATCCTGGATCTT 9179392 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | || || |||||||| || | ||||| | || ||||| Sbjct 9179391 GGCCTTGACATTATCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGT 9179332 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| Sbjct 9179331 AAGGGTTTTCACGAATATCTGCAT 9179308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429349938623375