Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3 109 4e-19 seq6 107 1e-18 seq1 107 1e-18 seq2 86.0 4e-12 seq5 82.4 5e-11 >seq3 Length=41204908 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||||| ||||| || || ||||| || || || || || | Sbjct 291161 AATGCAGATATTCGTGAAAACCCTTACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTC 291220 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || | | ||||| || || | || ||||||| Sbjct 291221 TGACACCATTGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCACCAGATC 291279 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| | || || || || ||||| || || |||| ||||| | | ||| |||| Sbjct 291280 AGCAACGTCTCATCTTCGCAGGAAAACAGCTCGAGGACGGTCGCACCCTCGCCGACTACA 291339 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 291340 ACATCCAGAAAGAGTCCAC 291358 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| || || ||||| || || || || || | Sbjct 288574 ATGCAGATATTCGTGAAAACCCTTACGGGGAAGACAATCACCCTTGAGGTGGAGTCTTCT 288633 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || |||||||| Sbjct 288634 GACACCATTGATAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCACCAGATCA 288692 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || || |||| ||||| | | ||| ||||| Sbjct 288693 GCAGCGTCTCATCTTCGCAGGAAAGCAGCTTGAGGACGGTCGCACCCTCGCCGACTACAA 288752 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 288753 CATCCAGAAAGAGTCCAC 288770 >seq6 Length=19356003 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| || || ||||| || || || || || | Sbjct 11947243 ATGCAGATATTCGTGAAAACCCTTACGGGGAAGACCATCACCCTTGAGGTGGAGTCTTCT 11947184 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || || ||||| Sbjct 11947183 GACACCATTGACAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGCATCCCACCGGATCA 11947125 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || ||||| || |||| |||||| | | || ||||| Sbjct 11947124 GCAGCGTCTCATCTTCGCAGGAAAGCAACTCGAGGACGGCCGCACTCTCGCGGACTACAA 11947065 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 11947064 CATCCAGAAAGAGTCCAC 11947047 >seq1 Length=42234885 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| || ||||| || || || |||||||||||||| || | | Sbjct 6126439 ATGCAAATCTTCGTTAAGACTCTCACCGGTAAGACCATCACTCTCGAAGTAGAGAGCTCA 6126380 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | || | || ||||| ||||| | || || || || Sbjct 6126379 GATACCATTGATAATGTGAAAGCCAAGA-TTCAAGACAAGGAAGGAATCCCACCGGACCA 6126321 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||| |||||||| || || || | || || | | |||||||| Sbjct 6126320 GCAACGTCTCATTTTTGCTGGCAAACAGCTTGAGGATGGTCGTACCCTTGCTGATTACAA 6126261 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 6126260 CATTCAAAAGGAGTCCAC 6126243 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| | || || ||||| ||||| || || ||||| ||| | Sbjct 37707630 ATGCAGATATTCGTGAAAACTTTGACCGGCAAAACCATCACCCTTGAGGTTGAATCCTCC 37707571 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| ||| ||| ||||| || ||| | || || || || Sbjct 37707570 GACACCATTGATAACGTGAAAGCAAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAG 37707511 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || ||||| || || | |||||| | | ||||||||| Sbjct 37707510 CAGAGACTTATCTTTGCGGGTAAGCAACTCGAGGATGGTCGCACTCTTGCGGATTACAAC 37707451 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || ||||| Sbjct 37707450 ATCCAAAAGGAATCCAC 37707434 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| | || |||||||| ||||| ||||| || || ||| | Sbjct 37703440 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACACTCGAGGTGGAATCCTCC 37703381 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | |||||||||||| | || || ||||| Sbjct 37703380 GATACCATTGATAATGTGAAGGCTAAGA-TCCAGGACAAAGAAGGTATCCCTCCGGATCA 37703322 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || |||||||| || |||| | | || | | |||||||| Sbjct 37703321 GCAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGACGGAAGAACCCTTGCTGATTACAA 37703262 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| ||||| || ||||| | || || ||| Sbjct 37703261 CATTCAAAAGGAATCCACTCTCCACTTGGTT 37703231 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || |||||||| ||||| || ||||| || || || || | | Sbjct 6126212 AATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTCGAAAGCTC 6126153 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | || | || ||||| || ||| | || ||||| | Sbjct 6126152 TGACACTATAGACAATGTCAAGGCCAAGA-TTCAAGACAAGGAGGGTATCCCACCAGACC 6126094 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | ||||||||||| || ||||| ||||| | || || || | ||||| | Sbjct 6126093 AGCAGAGGCTCATATTTGCCGGAAAGCAACTAGAAGATGGCCGAACCTTGGCAGATTATA 6126034 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||| || || Sbjct 6126033 ACATTCAGAAAGAATCAAC 6126015 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | || || ||||| || ||| | || ||||| | | Sbjct 37702757 AATGCAGATTTTTGTGAAGACTTTAACTGGGAAAACCATAACTTTGGAGGTTGAAAGCTC 37702698 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | |||| ||| ||| ||||| ||||| | || || || || Sbjct 37702697 TGACACTATTGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCGGACCA 37702638 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || ||||||| | || || | | ||||| || Sbjct 37702637 GCAGAGACTTATCTTTGCTGGGAAGCAGTTGGAAGATGGGCGTACCCTTGCAGATTATAA 37702578 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| ||||| | || || || || ||| | || || ||| Sbjct 37702577 CATCCAGAAAGAATCCACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGA 37702529 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || |||||| | || ||||| | | Sbjct 6125755 ATGCAGATCTTTGTGAAGACTTTAACAGGGAAGACTATCACTTTGGAGGTTGAAAGCTCA 6125696 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || |||||| ||||| ||||| | || |||||||| Sbjct 6125695 GATACAATTGATAACGTCAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAG 6125636 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || ||| |||| || | | ||| | | ||||||||| Sbjct 6125635 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGGAGGACTCTTGCTGATTACAAC 6125576 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 6125575 ATTCAGAAAGAGTCCAC 6125559 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || || ||||| || || | || || || | | Sbjct 37712423 ATGCAGATTTTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAAAGCTCT 37712364 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || || ||| ||| ||||| || || | || |||||||| Sbjct 37712363 GATACAATTGATAATGTGAAGAC-AAAGATTCAGGACAAGGAGGGCATCCCACCAGATCA 37712305 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || ||| ||||||| | || || || | || ||||| Sbjct 37712304 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACAA 37712245 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 37712244 CATTCAGAAAGAATCCAC 37712227 >seq2 Length=35625406 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||||| || ||||| || ||||||||||| || || | | Sbjct 31177418 ATGCAGATCTTCGTTAAGACCCTTACCGGAAAGACCATCACTCTCGAGGTCGAGAGCTCC 31177359 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | || || || ||||| ||||| | || || || || Sbjct 31177358 GATACTATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAG 31177299 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || || || || || || | |||||| | | ||| |||||| Sbjct 31177298 CAACGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGCACCCTCGCCGACTACAAC 31177239 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | || ||||| Sbjct 31177238 ATCCAGAAGGAATCAACCCTTCACCTAGTT 31177209 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||||| || ||||| || ||||||||||| || || | | Sbjct 31177646 ATGCAGATCTTCGTTAAGACCCTTACCGGAAAGACCATCACTCTCGAGGTCGAGAGCTCC 31177587 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | || || || || || ||||| | || || || || Sbjct 31177586 GATACTATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCCCCTGACCAG 31177527 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || ||||| || || || | ||||| | | ||| |||||| Sbjct 31177526 CAACGTCTCATCTTCGCTGGAAAACAGCTCGAGGATGGCCGCACCCTCGCCGACTACAAC 31177467 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | || ||||| Sbjct 31177466 ATCCAGAAGGAATCAACCCTTCACCTAGTT 31177437 >seq5 Length=30687117 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || || || || ||| | || || ||||| || || ||||||||| Sbjct 2508494 GACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 2508553 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | ||||| | | ||||| ||||||||||| || || || | || || || || Sbjct 2508554 GATGGTCGCACACTTGCTGATTATAACATACAAAAGGAATCTACCCTTCACTTGGTCTTG 2508613 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | |||||||| Sbjct 2508614 AGGCTCAGAGGAGGA 2508628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337855633986500