Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 138 2e-27 seq1 109 8e-19 seq25 95.1 2e-14 >seq3 Length=41204908 Score = 138 bits (152), Expect = 2e-27 Identities = 380/578 (66%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || ||||| ||||| || || | || | |||||| || || ||||| Sbjct 26200340 CAAGCGAAGTCGCAATGGAGACCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 26200399 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||| || || ||||| |||||||| || || | || |||| | || || ||||| Sbjct 26200400 CCTGGCATGAGGCCCCGTTTCTTGAGCCAGAAGATGGA-GCAAAAGCTTCCGGAGAAGAA 26200458 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 || || || ||| ||||| ||| || | ||| || | | || | | || Sbjct 26200459 GATACCCTCGACGCAGGCAAAGGCGACGAGGCGCTCGGCGAAG--GACTCGGAGGAGTCG 26200516 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || | ||||| | |||||||| | || || || || || || || || | | Sbjct 26200517 ATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTGA 26200576 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 |||||| | |||| || | ||||| | ||| || || | | || || ||||| Sbjct 26200577 AAGAGACGGGTTTTCTCTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTACATC 26200636 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 ||||||||||| || || || || ||||| || |||||||| | || || | || | Sbjct 26200637 TCGGAGTGAATGTTCTCGATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAGACC 26200696 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || |||||| | ||| || | || | || || ||| || || || || || Sbjct 26200697 TGGACCTCCTTCATAAAACGGCCGGCAAGGTTTTCTAGTACGATGCCGTCGGAGGCGGCG 26200756 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 || || || | ||||| | | |||| ||| | || || | ||||||| | Sbjct 26200757 AAGAAGGCGAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAGTGA 26200816 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 |||| || | || | || || || || || ||||| || || || |||||||| || Sbjct 26200817 CTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAACGAGGCTTCTGCTTTCTTG 26200876 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 ||||| | ||| || | ||||||||| ||||| || Sbjct 26200877 TACATTTCCCAGATTTGGGGGTATTGGATAGGGAACAT 26200914 Score = 104 bits (114), Expect = 3e-17 Identities = 231/343 (67%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || ||||| |||||||||| || | |||||| || || |||||| Sbjct 34261340 CACGCGAAGTCGCAGTGAAGCCCTTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGA 34261281 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 |||||||| | ||||| || |||||||||||||| | || ||| | || || ||||| Sbjct 34261280 CCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCG-AGCAGAAGCTGCCGGAGAAGAA 34261222 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TG 48316 || || || ||| || || ||| || | ||| || | || ||| || | Sbjct 34261221 GATTCCCTCAACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA---GGAGTCGGTGGCATC 34261165 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || ||||| | |||||||| ||||| || || || || | || Sbjct 34261164 GATCCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCG 34261105 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 || || || ||||| || ||||| | ||| || || | | ||||| ||||| Sbjct 34261104 GAACAGGTGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACAT 34261045 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 |||||||| || || || || || ||||| || ||||| ||| Sbjct 34261044 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAA 34261002 >seq1 Length=42234885 Score = 109 bits (120), Expect = 8e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 |||||||| || ||||| || || |||||||| || |||||| |||| |||| || Sbjct 1930578 TCTCTTTCGTACTGAGTGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCCAAACCT 1930519 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || ||||||| ||||| | ||| ||||| | |||| || ||||| || ||||||| Sbjct 1930518 GGAGATTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAAG 1930459 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| |||||| ||| | ||||| | | ||| ||||| Sbjct 1930458 AGATCAGGCACCCAAAGAGCATAAAACAAATCTCTAGCACGATGCTCTTC 1930409 >seq25 Length=312266 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 |||||||||||| || ||| ||| |||||||| | |||||| ||| |||| | Sbjct 242741 TCTCTTTCATATCGATGATAAAGCTCCTCAAATTCCTGACCCCAACAATCTGCCAAACGT 242682 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||||| || || | ||| ||||| | |||| || ||||| || ||||||| Sbjct 242681 GGTGCTTCATTGGGACAAAACAAAGACCAATGTCCATTACTCTGAACTCTTTCCATAAAG 242622 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||| || | ||| |||||| ||| |||||||| | | |||||| || Sbjct 242621 AGATCTGGCACCCAAAGAGCATAAAACAGATCTCGTGCACGATGTTCCTC 242572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694344259420000