Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 seq25 86.0 9e-12 >seq1 Length=42234885 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | || | ||||| | ||| | || | || |||||||| ||| || Sbjct 1930103 CCCCCTTGATCCACGTAACGAGCAGTATCATTGAACACACGCAGCATTGGAACAATACCA 1930044 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| || ||||| || ||||||||||| || ||| Sbjct 1930043 TTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGAA 1929984 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| || || ||| || | |||||| ||||| |||||||| || Sbjct 1929983 ACACCAATTCCACCGGCTGATTTGCTAATGATAGCACACTCCTTCAAAGTGTCATATATT 1929924 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||||||||||||||| ||||| | ||| || || ||| Sbjct 1929923 CCCTCTATACTATCATCTTTCATGCACACAAGGAAGCAACTA 1929882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||| || || || || | |||||||| || |||||| |||| ||||||| Sbjct 1930578 TCTCTTTCGTACTGAGTGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCCAAACCT 1930519 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 ||| ||||||| || || | ||| ||||| | |||| || ||| | || ||||||| Sbjct 1930518 GGAGATTCATTGGGGCAAAACAAAGACCATTGCCCATTGCTCTGAACTCTTTCCATAAAG 1930459 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 |||||||| | ||| |||||| ||| | ||||| Sbjct 1930458 AGATCAGGCACCCAAAGAGCATAAAACAAATCTC 1930425 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| || || || | || |||||||||||||||||||| || ||| | || | | Sbjct 1929747 GTTCCCGCGTTGAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATCAGGTGG 1929688 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| | | | || || || || | ||||||||| |||||||| | ||||||| Sbjct 1929687 TAAGTTTTGACAGCAGCATCAATGTCTTCCTTATGAATTCCAACAGCGACCCTCATCAAC 1929628 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || |||| ||| ||| ||| | | || || | ||| || | || | Sbjct 1929627 ATGTGTTGTGGTCTTTCCACAACCTTGCCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 1929568 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| ||||||||||| | || |||||| || || || || || Sbjct 1929567 GTTTTGAAACCAAAATAATCATAGTCAAAGTCCCTATCATAGATTAT 1929521 >seq25 Length=312266 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||||||||||| | ||| | | |||||||| | |||||| ||| |||||| Sbjct 242741 TCTCTTTCATATCGATGATAAAGCTCCTCAAATTCCTGACCCCAACAATCTGCCAAACGT 242682 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||||| ||||| | ||| ||||| | |||| || ||| | || ||||||| Sbjct 242681 GGTGCTTCATTGGGACAAAACAAAGACCAATGTCCATTACTCTGAACTCTTTCCATAAAG 242622 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 ||||| || | ||| |||||| ||| |||||||| Sbjct 242621 AGATCTGGCACCCAAAGAGCATAAAACAGATCTCG 242587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712601325960000