Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20angularis_20[refseq_20GCF_5F001190045.1_202015-07-31] 37,375 sequences; 467,300,602 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5 134 1e-26 seq3 123 2e-23 seq6 120 3e-22 seq2 120 3e-22 seq1 104 2e-17 seq109 102 8e-17 >seq5 Length=30687117 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || ||| |||||| || ||||| ||||||| | Sbjct 9179534 CCACCGCGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGCG 9179475 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| |||||||| || || ||||| ||||||| || Sbjct 9179474 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG 9179415 Query 41756 ACGCTCTCCTTGTCCATGATTTT----TTG-CTTCAACGACGACACAGTGTCGCTCGACT 41810 | || |||||| ||| ||| || ||| | | | ||| | ||||| |||| Sbjct 9179414 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTATCGATG-----GTGTCAGAAGACT 9179360 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| | || || || || ||||| || || || ||||| |||||||| Sbjct 9179359 CCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 9179308 >seq3 Length=41204908 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| ||||| | || || || || ||| ||| ||||| ||||| ||||||| Sbjct 288802 CGCCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 288743 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| |||| || |||||||| || ||||| || || ||||| || || | | Sbjct 288742 CGAGGGTGCGACCGTCCTCAAGCTGCTTTCCTGCGAAGATGAGACGCTGCTGATCTGGTG 288683 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCC 41812 | | || |||||||||| ||| || ||| | | | | | ||||| |||||| Sbjct 288682 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCA-ATGGTGTCAGAAGACTCC 288624 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || ||||| || || || ||||| |||||||| Sbjct 288623 ACCTCAAGGGTGATTGTCTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 288574 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| ||||| | || || || || ||| ||| ||||| ||||| ||||||| Sbjct 291390 CGCCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 291331 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||||||| |||| |||||||| || || ||||| || || || || || || | | Sbjct 291330 CGAGGGTGCGACCGTCCTCGAGCTGTTTTCCTGCGAAGATGAGACGTTGCTGATCTGGTG 291271 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCC 41812 | | || |||||||||| ||| || ||| | | | || | |||| |||||| Sbjct 291270 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTGTCAATGGTGTCAGAAGACTCC 291212 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || ||||| || || || ||||| |||||||| Sbjct 291211 ACCTCAAGGGTGATTGTCTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 291162 >seq6 Length=19356003 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| ||||| | || || || || ||| ||| ||||| ||||| ||||| | Sbjct 11947015 CGCCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCG 11947074 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||| ||||| |||| ||||| ||||| || ||||| || || ||||| || |||| | Sbjct 11947075 CGAGAGTGCGGCCGTCCTCGAGTTGCTTTCCTGCGAAGATGAGACGCTGCTGATCCGGTG 11947134 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCC 41812 | | || |||||||||| ||| || ||| | | | || | |||| |||||| Sbjct 11947135 GGATGCCCTCCTTGTCCTGGATCTTAGCCTTGA-CATTGTCAATGGTGTCAGAAGACTCC 11947193 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || ||||| || || || ||||| |||||||| Sbjct 11947194 ACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 11947243 >seq2 Length=35625406 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || || || || || |||||||| ||||| ||||||| Sbjct 31177191 GCCACCGCGGAGACGGAGAACTAGGTGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGC 31177250 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || ||||||||||| || ||||| || || || || ||||| | ||| Sbjct 31177251 GAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGGGG 31177310 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||||| ||| || |||| ||| | | | ||| ||| ||| | Sbjct 31177311 AATTCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCAATAGTATCGGAGCTCTCGA 31177369 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 31177370 CCTCGAGAGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATCTGCATG 31177419 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| |||||||||||||| || || | Sbjct 31176279 GCCCCCACGAAGACGCAGAACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGC 31176338 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | || || ||||| || |||||||| |||| | ||| ||||||| ||| Sbjct 31176339 AAGGGTCCTTCCATCCTCCAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGG 31176398 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 || | |||||||||| || | || || | ||| | | | ||||| ||| || Sbjct 31176399 AATTCCCTCCTTGTCC-TGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAGCT---CT 31176454 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| | || || || || || || || ||||| || || ||||||||| Sbjct 31176455 CAACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATG 31176507 >seq1 Length=42234885 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| |||||||||||||||||| || | || || || Sbjct 6125766 AGACGAAGTACAAGATGAAGAGTGGACTCCTTCTGAATGTTATAATCAGCCAGAGTACGT 6125825 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || |||| | || ||||| | |||| || |||| Sbjct 6125826 CCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAATGCCCTCC 6125885 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || || | || | | | ||||| ||||||||||| || Sbjct 6125886 TTGTCC-TGTATCTTGGCCTTGACATTGTCAATCGTGTCTGAACTCTCCACCTCCAAAGT 6125944 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || || ||||| |||||||||||||| Sbjct 6125945 AATTGTTTTTCCAGTAAGGGTCTTGACGAAAATCTGCAT 6125983 Score = 100 bits (110), Expect = 3e-16 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||||| ||| || ||||| |||||||| || | ||||| ||| | || Sbjct 37702545 AACACCAAGTGCAGAGTGGATTCTTTCTGGATGTTATAATCTGCAAGGGTACGCCCATCT 37702604 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | |||||| || || || || || | ||| ||||||| || | || ||||||||| Sbjct 37702605 TCCAACTGCTTCCCAGCAAAGATAAGTCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 37702664 Query 41771 ATGATTTTTTGCTTCAACGACGACAC-AGTGTC---GCTCGACTCCACCTCCACCGTTAT 41826 ||| | ||||| | || | || |||||| ||| || ||||||| ||||| Sbjct 37702665 -TGAATCTTTGCCTTTACATTGTCAATAGTGTCAGAGCTT---TCAACCTCCAAAGTTAT 37702720 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || | ||||| || ||||||||||| Sbjct 37702721 GGTTTTCCCAGTTAAAGTCTTCACAAAAATCTGCAT 37702756 >seq109 Length=622178 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||| || || ||||| | Sbjct 289241 CCACCACGAAGACGCAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 289300 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | | || || | ||||| || ||||| ||||| | ||| ||||||| ||| Sbjct 289301 AGGGTCCTCCCATCTTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGTGGA 289360 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| |||| || | || | || |||||| ||| || Sbjct 289361 ATTCCCTCCTTGTCC-TGAATTTTCGCCTTCACATTGTCAATAGTGTCAGAACTCTCAAC 289419 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || |||| ||||| || ||||||||||| Sbjct 289420 CTCCAGAGTGATTGTCTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 289467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462088017350000