Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1493 147 5e-30 seq5 102 2e-16 seq1 100 6e-16 seq1492 98.7 2e-15 seq596 98.7 2e-15 seq451 98.7 2e-15 seq11 98.7 2e-15 seq10 98.7 2e-15 seq9 98.7 2e-15 seq8 98.7 2e-15 seq7 98.7 2e-15 seq6 98.7 2e-15 seq3 87.8 4e-12 >seq1493 Length=4971659 Score = 147 bits (162), Expect = 5e-30 Identities = 307/455 (67%), Gaps = 2/455 (0%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || |||||||| |||||||||| | || || || || || | || ||||| || Sbjct 4757402 TCCTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGAAGC 4757461 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 || ||| ||||||||||||| ||| || | ||||| || ||| | | || ||| Sbjct 4757462 TTTTGCTCCATCTTTTGGCTCAAGAAACGGGGCCTCATGCCAGGACTCACTTTCTCCAAC 4757521 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAG 230349 || ||||| || |||||||||||||| | |||| || | || || | Sbjct 4757522 GAACTCATCTCCCGAGACGAGGGTCTCCACTGCGACTTCGCTTGCCTGCTCTACTCTATC 4757581 Query 230350 CTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | | || |||||| || ||| || | | ||| | || || ||||| | Sbjct 4757582 ATGCGGACCAAGCTCCCCGAGGAGCGCGTGAGGGAGATCGTGCGCGATGCTGTTGACATT 4757641 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAACT 230468 || | ||||||| | || ||||| |||| || ||| || ||| ||||||| | | Sbjct 4757642 GAGAGGGAGTTCGTCTGCGACGCGCTTCCTTG-CGCGTTGGTGGGGATGAACGGGGCCTT 4757700 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | |||||||| || || || || || | | | | ||| ||||| | || ||| Sbjct 4757701 GATGAGTCAGTACATTGAGTTTGTTGCTGATAGGTTGCTCGGTGCGCTTGGGTGCGGGAA 4757760 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| ||||||| || | | |||||||| |||||||| || |||||||| Sbjct 4757761 GGTGTACAATGTGCAGAACCCATTCGATTGGATGGAGCTGATTTCGCTGCAGGGGAAGAC 4757820 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||| ||||| || | || || |||| Sbjct 4757821 CAACTTCTTCGAGAAGCGCGTGGGGGAGTACCAGA 4757855 >seq5 Length=37180910 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 14208524 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 14208583 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 14208584 GCCCCACGGTGGGC 14208597 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 30017168 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 30017227 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 30017228 CCCACGGTGGGC 30017239 >seq1 Length=36501346 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 7762621 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7762562 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 7762561 CCCCACGGTGGGC 7762549 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7768190 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7768131 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7768130 CCCACGGTGGGC 7768119 >seq1492 Length=1071677 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 500910 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 500851 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 500850 CCCACGGTGGGC 500839 >seq596 Length=1668622 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 123949 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 123890 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 123889 CCCACGGTGGGC 123878 >seq451 Length=412989 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 347086 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 347027 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 347026 CCCACGGTGGGC 347015 >seq11 Length=19732206 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3274712 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3274771 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3274772 CCCACGGTGGGC 3274783 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3325852 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3325911 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3325912 CCCACGGTGGGC 3325923 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 17041988 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17042047 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17042048 CCCACGGTGGGC 17042059 Score = 95.1 bits (104), Expect = 3e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 165700 TAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGT 165759 ||||||| |||||||||||||||| || ||||||| || || |||| || |||||| | Sbjct 2456959 TAAAACGTAAGCCCGTCTAGCTCAGTTGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCTT 2457018 Query 165760 GGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||| ||||| Sbjct 2457019 GGGTTCGAGCCCCACGGTGGGC 2457040 >seq10 Length=20996616 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 17153663 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17153604 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17153603 CCCACGGTGGGC 17153592 >seq9 Length=21008463 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 544115 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 544056 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 544055 CCCACGGTGGGC 544044 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1228729 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1228670 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1228669 CCCACGGTGGGC 1228658 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1311381 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1311440 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1311441 CCCACGGTGGGC 1311452 >seq8 Length=45727239 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 44810301 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 44810242 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 44810241 CCCACGGTGGGC 44810230 >seq7 Length=55601358 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 44089643 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 44089584 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 44089583 CCCACGGTGGGC 44089572 >seq6 Length=37436759 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4936180 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4936239 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4936240 CCCACGGTGGGC 4936251 >seq3 Length=12950713 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/201 (71%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||||||||||||||| ||| | || ||||| ||||||||||| || | || Sbjct 6095170 TCTGCATGTTCCCAATCCAATACCCCCAAATCTGGGAAATGTACAAGAAAGCCGAAGCCT 6095229 Query 229811 CTTTCTGGACCACTGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAA 229868 |||||||||| | || || ||| ||||| | |||| || | ||||| || Sbjct 6095230 CTTTCTGGACAGCCGAAGAGGTTGACCTCT--CCCAAGACCTCCGCCACTGG---GACTC 6095284 Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928 |||| |||| ||| || || ||||||| ||| |||| | || || || | |||||| Sbjct 6095285 CCTCACCGACGGCGAGCGCCACTTCATCACCCACGTCCTCGCCTTCTTTGCCGCCTCCGA 6095344 Query 229929 TGGTATTGTGATGGAAAATCT 229949 || || || | ||||| || Sbjct 6095345 CGGCATCGTTCTCGAAAACCT 6095365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057790130128370