Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq1493 122 9e-23 >seq3 Length=12950713 Score = 131 bits (144), Expect = 2e-25 Identities = 474/727 (65%), Gaps = 25/727 (3%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 || || || | |||||| ||||| || ||||||||||| |||| ||||||||| |||| Sbjct 6096037 TGATAGTCCCCAACGCGCTTTTCAAAGAAGTTAGTTTTCCCCTGGAGAGATATAAGCTCC 6095978 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATT-----TTAGAGTACCCCAGTTCGGCGA 16790 || ||||||| ||||| ||||| || | || | | || || | | | Sbjct 6095977 ATCCAATCAAAGGGATT-----CTGAACATCGTACACCTTCCCGCATCCAAGCGCACCAA 6095923 Query 16791 TTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAA 16850 | | |||||| ||||| || ||||| || | ||| | || | |||||| || | | Sbjct 6095922 GCAGCCGATCCGCGACAAACTCGATATACTGACTCATCAGCTCCCCGTTCATCCCCACCA 6095863 Query 16851 GACGTACCGG-AAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAAT 16908 ||| || || ||| || || || ||| || | |||||| |||||||||| | Sbjct 6095862 -ACGCACAGGGAAGCGCGTCGCACACAAACTCCCT-CTCTATGTCAACCGCTTCGCGCAC 6095805 Query 16909 AATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 ||| || || ||||||| | | | | || | ||| || || || Sbjct 6095804 AATCTCCTTCACGCGCTCCTCGGTGAGCTTCTTCCTGAGGAGAGAGTACAAGAGGCACGC 6095745 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCG 17026 ||| ||||| || | || || |||| || |||| |||||||| || || || | ||| Sbjct 6095744 GAAGTCGCAGTGGAGCCCTTCATCTC-GC-GATATGAGTTCGTTGGAGAAGGTGAGACCG 6095687 Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086 |||||| || || ||||| | ||||||||||| | ||| || || ||||| || Sbjct 6095686 GGCATCAAGCCACGCTTCTTGAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAGATT 6095627 Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146 ||||||||| | || || |||| | || |||||| | | ||| || | ||| Sbjct 6095626 CCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGA---GTCGGTGGCATCGATC 6095570 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT 17206 || | |||| | ||| || | | || || || || | ||| || Sbjct 6095569 CAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAAC 6095510 Query 17207 A-ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 | || |||||| || || || | || || || || | ||| || |||||||| || Sbjct 6095509 AGATGATTCTTTTCGGTGGAG-TCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 6095451 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTT 17324 |||||| |||||||| ||||| ||||| || ||||| |||||| || || || || || Sbjct 6095450 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCA-CGAGCCTCGGCGGCTT 6095392 Query 17325 GAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 | | |||| ||| || | || || |||||| |||||||||||| ||||| | Sbjct 6095391 GGATTTCCTTCATGAAGCGGGCGGCAAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAA 6095332 Query 17385 AAAACGC 17391 | || || Sbjct 6095331 AGAAGGC 6095325 >seq1493 Length=4971659 Score = 122 bits (134), Expect = 9e-23 Identities = 292/434 (67%), Gaps = 7/434 (2%) Strand=Plus/Minus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 ||| || ||||| ||||| || | |||||||||| | ||| |||||||| || || || Sbjct 4757569 CAGGCAAGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGT 4757510 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 | || ||||| || |||||||| | |||||| || | | || || || || Sbjct 4757509 GAGTCCTGGCATGAGGCCCCGTTTCTTGAGCCAAAAGATGGAGCAAAAGCTTCCGGAGAA 4757450 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| || ||||||||| | || || |||| | || |||||| | | | || || Sbjct 4757449 GAAGATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGT- 4757391 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 ||| |||| | |||| | ||| || | | | ||| || || || ||||| Sbjct 4757390 -CGA-TCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGC 4757333 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | ||| | ||||| || | ||| |||| || || |||| ||| ||||||| Sbjct 4757332 GTGAAAGAGACGG-CTTTTCTCTACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGT 4757274 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 |||| |||||||| |||||||| || || ||||| || ||||||||| || || || | Sbjct 4757273 ACATCTCGGAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGG 4757214 Query 17319 CTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 | || || ||| | || || || | || ||||||||| |||||||||||| Sbjct 4757213 AGACCTGGACCTCCTTCATA-AAACGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAG 4757155 Query 17378 GCGGCGAAAAACGC 17391 || ||||| || || Sbjct 4757154 GCAGCGAAGAAGGC 4757141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517529433169320