Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 1e-12 seq2 87.8 1e-12 >seq7 Length=55601358 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 19002 CAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATG 19061 ||||||||||| ||||| || |||||||| || ||| | || ||| |||| | ||| ||| Sbjct 31491374 CAGTTTTACGTAGCAAATGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATG 31491315 Query 19062 GGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCAT 19121 ||||| ||||| || || || ||||| ||||| || || || | ||| | || ||| Sbjct 31491314 GGCCTGGGGGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCCCAT 31491255 Query 19122 GTT 19124 ||| Sbjct 31491254 GTT 31491252 >seq2 Length=25360630 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 19002 CAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATG 19061 ||||||||||| ||||| || |||||||| || ||| | || ||| |||| | ||| ||| Sbjct 3054467 CAGTTTTACGTAGCAAATGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATG 3054526 Query 19062 GGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCAT 19121 ||||| ||||| || || || ||||| ||||| || || || | ||| | || ||| Sbjct 3054527 GGCCTGGGGGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 3054586 Query 19122 GTT 19124 ||| Sbjct 3054587 GTT 3054589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399491832481455