Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1493 158 1e-33 seq3 120 4e-22 seq1 89.7 6e-13 >seq1493 Length=4971659 Score = 158 bits (174), Expect = 1e-33 Identities = 388/581 (67%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| ||||||||||||| || | ||||||||| || |||||| Sbjct 4757565 CAAGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 4757506 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAAAGAA 24253 || ||||| ||||| || || || |||||||| ||||| ||||| | ||| || ||||| Sbjct 4757505 CCTGGCATGAGGCCCCGTTTCTTGAGCCAAAAGATGGA-GCAAAAGCTTCCGGAGAAGAA 4757447 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC--ATAAC-CGGCGCTGTCATG 24310 ||||| || || || ||||| | || | || | | || ||| | ||| Sbjct 4757446 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGTC--- 4757390 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | ||||| | ||||||||| | || || || || || || || || | Sbjct 4757389 GATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTG 4757330 Query 24371 AAAGAGATAGtttttttCATTAC--TATCTTTAACATATGTATCAATCAAAAGACTATAC 24428 ||||||| | |||| || ||| ||||| | || || || | | || || ||| Sbjct 4757329 AAAGAGACGGCTTTTCTC--TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTAC 4757272 Query 24429 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 24488 || || || |||||||| || || || || || || ||||| || | |||||||| Sbjct 4757271 ATCTCGGAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAG 4757212 Query 24489 ATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 24548 | ||| || || | ||| || | || | |||||| || || ||||| ||| Sbjct 4757211 ACCTGGACCTCCTTCATAAAACGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAGGCA 4757152 Query 24549 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 24608 || || || || | ||||| | | |||| ||| | || || | ||||| Sbjct 4757151 GCGAAGAAGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAG 4757092 Query 24609 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668 | | |||| || | || | ||||| || ||| | ||||| || || || ||||| || Sbjct 4757091 TGACTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCTTCTGCTTTC 4757032 Query 24669 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || ||||| | |||||| | | |||||||| || || || Sbjct 4757031 TTGTACATTTCCCAGATTTGGGGGTATTGAATAGGGAACAT 4756991 >seq3 Length=12950713 Score = 120 bits (132), Expect = 4e-22 Identities = 240/353 (68%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| || || || |||| || | ||||||||| || ||||| Sbjct 6095749 CACGCGAAGTCGCAGTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGA 6095690 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 |||||||| | ||||||||| || ||||||||||| || ||| | | | || || ||||| Sbjct 6095689 CCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 6095631 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 ||||| || || || ||||| | || | || | | | || || ||| || Sbjct 6095630 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGGTGGCATCGAT 6095571 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||| ||||| | ||||||||| ||||| || || || || | || || Sbjct 6095570 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAA 6095511 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 |||| || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 6095510 CAGATGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 6095451 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 || || ||||| || ||||| || || || ||||||||| | |||||||| Sbjct 6095450 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGAGCCTCGG 6095398 >seq1 Length=36501346 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 21164179 TCCCCCTTGATCCACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAAGAATACC 21164238 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| || || ||| || || || ||||||||||||| || || Sbjct 21164239 ATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 21164298 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTATCATAGA 54362 | ||| || || || || ||| | | |||| || || || || || ||||| | Sbjct 21164299 AACACCAATTCCACCAGCTGATTT-GCTAATAATAGCACACTCCTTCAAAGTGTCATATA 21164357 Query 54363 TGCCCTCTATACTATCATCCATCATG 54388 | ||||||||||||||||| ||||| Sbjct 21164358 TTCCCTCTATACTATCATCTTTCATG 21164383 Score = 86.0 bits (94), Expect = 7e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 |||||||||||||| | || ||||| || || || ||||| || ||| | || | | Sbjct 21164537 GTTCCCGCATTAAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATAAGGTGG 21164596 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || | || ||| || || || || | ||||||||| || || || | ||| ||| Sbjct 21164597 TATGTTTTGACAGCAGAATCGATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 21164656 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||| || |||||||| || | ||| | | || | | |||||| | || | Sbjct 21164657 ATGTGTTGTGGTCTTTCCACCACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 21164716 Query 54605 GTTTTAAAACCAAAATA 54621 ||||| ||||||||||| Sbjct 21164717 GTTTTGAAACCAAAATA 21164733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593703053621520