Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq591 95.1 1e-14 seq7 93.3 4e-14 >seq591 Length=869021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| ||||| ||||| ||||| ||| ||| ||| | | Sbjct 243867 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAACCCTTGAAGTAGAATCGTCT 243808 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || ||||| ||| | || ||||| Sbjct 243807 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 243748 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || || ||||| || |||||||| || ||| | ||| | |||||||||||| Sbjct 243747 CAAAGGCTGATTTTTGCTGGTAAACAACTTGAGGATGGGAGAACCCTTGCCGATTACAAT 243688 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAgg 29188 ||||||||||| || || || ||| ||||| | || ||| | || || Sbjct 243687 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGGTTAAGGGGTGG 243641 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || |||||||| ||| ||| ||| || Sbjct 243411 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAAACCATAACCTTGGAAGTGGAGAGTTCA 243352 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || || ||| ||||| || ||| | ||| |||||| Sbjct 243351 GATACAATTGACAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAG 243292 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || ||||| | || | || ||||| || Sbjct 243291 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 243232 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||||||||| ||| | ||| |||| || Sbjct 243231 ATACAGAAGGAATCCACTTTGCACTTGGTTTT 243200 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| ||||| | || || |||| || |||||||||||| || |||| | | Sbjct 242956 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTAGAGGTGGAAAGCTC 242897 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| ||| ||| || || || || | || |||||| Sbjct 242896 TGATACAATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATCCCACCAGATCA 242837 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || ||||| ||||| || || ||| |||||||| || |||| |||||||| Sbjct 242836 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGGACCTTGGCAGATTACAA 242777 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 |||||||| ||||| || |||||| Sbjct 242776 CATTCAGAAAGAATCCACCCTTCAC 242752 >seq7 Length=55601358 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || || ||||| || || |||||||| ||| ||| | | Sbjct 47184186 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 47184127 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| ||| || || ||||| || | || ||| || Sbjct 47184126 TGATACCATTGATAATGTCAAGNCAAAGATCCAGGACAAAGAGGGNATTCCACCAGACCA 47184067 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| ||||||||||| || || || ||||||||| ||| | || ||||| || Sbjct 47184066 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 47184007 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||||||||||||||| ||| ||||||| Sbjct 47184006 CATCCAGAAGGAATCTACTCTGCACTTGGTGTT 47183974 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| ||||| ||||| ||||| ||| ||| ||| | | Sbjct 17086722 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAACCCTTGAAGTAGAATCGTCT 17086781 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || ||||| ||| | || ||||| Sbjct 17086782 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 17086841 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || || ||||| || ||||| || || ||| | ||| | |||||||||||| Sbjct 17086842 CAAAGGCTGATTTTTGCTGGTAAACANCTTGAGGATGGGAGAACCCTTGCCGATTACAAT 17086901 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAgg 29188 ||||||||||| || || || ||| ||||| | || ||| | || || Sbjct 17086902 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGGTTAAGGGGTGG 17086948 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| ||||| ||||| ||||| ||| ||| ||| | | Sbjct 47192342 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAACCCTTGAAGTAGAATCGTCT 47192283 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || ||||| ||| | || ||||| Sbjct 47192282 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 47192223 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || || ||||| || ||||| || || ||| | ||| |||||||||||||| Sbjct 47192222 CAAAGGCTGATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTGGCCGATTACAAT 47192163 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 ||||||||||| || || || ||| ||||| | || || Sbjct 47192162 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGGTT 47192125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || || ||||| || || |||||||| ||| ||| | | Sbjct 48398808 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 48398749 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| ||| || || ||||| || | || ||| || Sbjct 48398748 TGATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCACCAGACCA 48398689 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| ||||||||||| || || || ||||||||| ||| | || ||||| || Sbjct 48398688 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 48398629 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||||||||||||||| ||| ||||||| Sbjct 48398628 CATCCAGAAGGAATCTACTCTGCACTTGGTGTT 48398596 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || ||||| ||| ||| ||| || Sbjct 17087178 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 17087237 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || ||| ||| ||||| || ||| | ||| |||||| Sbjct 17087238 GATACAATTGACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAG 17087297 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || ||||| | || | || ||||| || Sbjct 17087298 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 17087357 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||||||||| ||| | ||| |||| || Sbjct 17087358 ATACAGAAGGAATCCACTTTGCACTTGGTTTT 17087389 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || ||||| |||||| || ||| || Sbjct 47180059 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 47180000 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || ||| ||||| || ||| | ||| |||||| Sbjct 47179999 GATACCATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAG 47179940 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || |||||||| |||||| | ||| | || ||||| ||| Sbjct 47179939 CAGAGGCTTATCTTTGCTGGGAAACAACTTGAAGATGGAAGAACCCTTGCGGATTATAAT 47179880 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| || || ||| | ||| |||| || Sbjct 47179879 ATCCAGAAAGAGTCCACTTTGCACTTGGTTTT 47179848 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || ||||| ||| ||| ||| || Sbjct 47191886 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 47191827 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || ||| ||| ||||| || ||| | ||| ||||||| Sbjct 47191826 GATACAATTGACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAA 47191767 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || ||||| | || | || ||||| || Sbjct 47191766 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 47191707 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| ||||| ||| | ||| |||| || Sbjct 47191706 ATACAGAAAGAATCCACTTTGCACTTGGTTTT 47191675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||| || ||||| ||||| || ||||| || || ||| | ||| | |||||| Sbjct 17087064 GATCAACAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTTGCCGAT 17087123 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAgg 29188 ||||||||||||||||| || || || ||| ||||| | || || |||| || Sbjct 17087124 TACAATATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGG 17087176 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||| || ||||| ||||| || |||||||| || ||| | || | || ||| Sbjct 47192000 GATCAACAGAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGAAGGACCCTTGCTGAT 47191941 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAgg 29188 ||||||||||||||||| || || |||||| ||||| | || || |||| || Sbjct 47191940 TACAATATTCAGAAGGAGTCAACCCTTCACTTGGTGCTTCGTTTGAGAGGTGG 47191888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || ||||| ||| || ||| || Sbjct 48399035 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACCATAACCTTAGAGGTGGAGAGTTCA 48398976 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || ||| ||||| || ||| | ||| ||| || Sbjct 48398975 GATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAG 48398916 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || |||||| | ||| | || |||||||| Sbjct 48398915 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTACAAC 48398856 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || ||||| |||||||| || ||| |||| || Sbjct 48398855 ATACAGAAAGAATCTACCCTGCACTTGGTTTT 48398824 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || || |||||||| || || || ||| || ||| | | Sbjct 37788902 AATGCAAATCTTTGTGAAGACGTTGACGGGAAAGACAATCACCCTTGAGGTAGAAAGCTC 37788961 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | | ||| || ||| || ||||| ||| | || ||| || Sbjct 37788962 CGACACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAGGGTATTCCACCAGACCA 37789021 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || || |||||||| || || ||||| ||||| | ||| |||| |||||||| Sbjct 37789022 ACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCTTGGCTGATTACAA 37789081 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||| || ||||| ||||| || ||| ||||| Sbjct 37789082 TATCCAAAAGGAGTCTACCCTACACTTGGTG 37789112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 28955 TGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA 29014 |||| | |||||||| ||| | ||||| ||||| || ||||| || ||| ||| ||| Sbjct 47180294 TGTACAGATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTCGAGGTGGA 47180235 Query 29015 ACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGT 29074 | || | || || | | || | ||| || || || |||||||| | || Sbjct 47180234 ATCCTCCGATACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCC 47180175 Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 ||||| || || || || || || || |||||||| || || | ||| | || || Sbjct 47180174 GGATCAGCAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGACGGTAGAACCCTTGCTGA 47180115 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||| ||||||||||| || || || ||| |||| Sbjct 47180114 TTACAACATTCAGAAGGAGTCCACGCTCCACTTGGT 47180079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428322954357845