Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq591 89.7 4e-13 seq7 89.7 4e-13 >seq591 Length=869021 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| ||||| ||||| ||||| ||| ||| ||| | | Sbjct 243867 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAACCCTTGAAGTAGAATCGTCT 243808 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || ||||| ||| | || ||||| Sbjct 243807 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 243748 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| || || ||||| || |||||| | || ||| | ||| | |||||||||||| Sbjct 243747 CAAAGGCTGATTTTTGCTGGTAAACAACTTGAGGATGGGAGAACCCTTGCCGATTACAAT 243688 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| || || || ||| ||||| | || ||| | || || Sbjct 243687 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGGTTAAGGGGTGG 243641 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| ||||| | || || |||| || |||||||||||| || |||| | | Sbjct 242956 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTAGAGGTGGAAAGCTC 242897 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | ||| ||| ||| || || || || | || |||||| Sbjct 242896 TGATACAATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATCCCACCAGATCA 242837 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||| ||||| || || |||||||||||| || |||| |||||||| Sbjct 242836 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGGACCTTGGCAGATTACAA 242777 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || ||||| || |||||| Sbjct 242776 CATTCAGAAAGAATCCACCCTTCAC 242752 >seq7 Length=55601358 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || || |||||||| ||| ||| | | Sbjct 47184186 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 47184127 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| ||| || || ||||| || | || ||| || Sbjct 47184126 TGATACCATTGATAATGTCAAGNCAAAGATCCAGGACAAAGAGGGNATTCCACCAGACCA 47184067 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| ||||||||||| || || || |||||||| ||| | || ||||| || Sbjct 47184066 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 47184007 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || || |||||||||||||| ||| ||||||| Sbjct 47184006 CATCCAGAAGGAATCTACTCTGCACTTGGTGTT 47183974 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || |||||||| || || || ||| || ||| | | Sbjct 37788902 AATGCAAATCTTTGTGAAGACGTTGACGGGAAAGACAATCACCCTTGAGGTAGAAAGCTC 37788961 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | | ||||| || ||| || ||||| ||| | || ||| || Sbjct 37788962 CGACACCATTGACAACGTCAAGGCCAAGATTCAAGACAAAGAGGGTATTCCACCAGACCA 37789021 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| || || |||||||| || || ||| | ||||| | ||| |||| |||||||| Sbjct 37789022 ACAGAGGCTCATCTTTGCTGGAAAGCAACTTGAAGACGGCCGAACCTTGGCTGATTACAA 37789081 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| |||||||| ||||| || ||| ||||| Sbjct 37789082 TATCCAAAAGGAGTCTACCCTACACTTGGTG 37789112 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| ||||| ||||| ||||| ||| ||| ||| | | Sbjct 47192342 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAACCCTTGAAGTAGAATCGTCT 47192283 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || ||||| ||| | || ||||| Sbjct 47192282 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 47192223 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| || || ||||| || ||||| | || ||| | ||| |||||||||||||| Sbjct 47192222 CAAAGGCTGATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTGGCCGATTACAAT 47192163 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252 ||||| ||||| || || || ||| ||||| | || || Sbjct 47192162 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGGTT 47192125 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || || |||||||| ||| ||| | | Sbjct 48398808 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 48398749 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || ||||| ||| || || ||||| || | || ||| || Sbjct 48398748 TGATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCACCAGACCA 48398689 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| ||||||||||| || || || |||||||| ||| | || ||||| || Sbjct 48398688 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 48398629 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || || |||||||||||||| ||| ||||||| Sbjct 48398628 CATCCAGAAGGAATCTACTCTGCACTTGGTGTT 48398596 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| ||||| ||||| ||||| ||| ||| ||| | | Sbjct 17086722 ATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAACCCTTGAAGTAGAATCGTCT 17086781 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || ||||| ||| | || ||||| Sbjct 17086782 GACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAG 17086841 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| || || ||||| || ||||| | || ||| | ||| | |||||||||||| Sbjct 17086842 CAAAGGCTGATTTTTGCTGGTAAACANCTTGAGGATGGGAGAACCCTTGCCGATTACAAT 17086901 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| || || || ||| ||||| | || ||| | || || Sbjct 17086902 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGGTTAAGGGGTGG 17086948 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| || ||||| |||||| || ||| || Sbjct 47180059 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 47180000 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| || ||| ||||| || ||| | ||| |||||| Sbjct 47179999 GATACCATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAG 47179940 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || |||||| | |||||| | ||| | || ||||| ||| Sbjct 47179939 CAGAGGCTTATCTTTGCTGGGAAACAACTTGAAGATGGAAGAACCCTTGCGGATTATAAT 47179880 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || || || || || ||| | ||| |||| || Sbjct 47179879 ATCCAGAAAGAGTCCACTTTGCACTTGGTTTT 47179848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410784288541586