Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq7 145 1e-29 seq591 140 5e-28 >seq7 Length=55601358 Score = 145 bits (160), Expect = 1e-29 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | ||||| || ||||| ||||| || || | ||| | ||| Sbjct 47191431 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACAATTACCTTGGAGGTGGAAAGCTC 47191372 Query 124598 TGATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| |||| | || ||| || ||||| || || || || |||||||| |||| Sbjct 47191371 TGATACAATTGATAATGTGAAGACA-AAGATTCAGGACAAGGAGGGCATACCACCAGATC 47191313 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| |||||||||||||| || || ||||| || ||| |||| || || | ||| || | Sbjct 47191312 AACAGAGGCTTATTTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACA 47191253 Query 124717 ATATTCAAAAAGAATCAAC 124735 | |||||||||||||| || Sbjct 47191252 ACATTCAAAAAGAATCCAC 47191234 Score = 138 bits (152), Expect = 2e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| || ||||| ||||| || || ||||| | || ||| Sbjct 47179376 AATGCAGATTTTTGTGAAGACTCTGACAGGAAAAACCATTACCTTAGAGGTGGAGAGCTC 47179317 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||||||| |||| | || || ||||| || || || || || ||||| |||| Sbjct 47179316 -TGATACAATCGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATCCCACCAGATC 47179258 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || || ||||| |||||| |||| || || | ||| || | Sbjct 47179257 AGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAGGATGGTCGTACCTTGGCAGACTACA 47179198 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||||| || ||||| || ||||| | ||| | || | || |||||| Sbjct 47179197 ATATTCAGAAGGAATCTACCCTGCATCTTGTTCTTCGCCTTCGCGGTGGT 47179148 Score = 136 bits (150), Expect = 6e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | ||||| || ||||| ||||| || || | ||| | ||| Sbjct 17087633 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAAAGCTC 17087692 Query 124598 TGATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| |||| | || ||| || |||||||| || || || || ||||| |||| Sbjct 17087693 TGATACAATTGATAATGTGAAGACA-AAGATTCAAGACAAGGAGGGCATCCCACCAGATC 17087751 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || || ||||| || ||| |||| || || | ||| || | Sbjct 17087752 AGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACA 17087811 Query 124717 ATATTCAAAAAGAATCAAC 124735 | ||||| |||||||| || Sbjct 17087812 ACATTCAGAAAGAATCCAC 17087830 Score = 131 bits (144), Expect = 3e-25 Identities = 174/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| | || || |||||||| || | ||| | || || | Sbjct 47180059 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCA 47180000 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | ||| || ||||| ||||| || ||||| || || ||||| Sbjct 47179999 -GATACCATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCA 47179941 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || |||||| | || ||| | |||| | | |||||||| Sbjct 47179940 GCAGAGGCTTATCTTTGCTGGGAAACAACTTGAAGATGGAAGAACCCTTGCGGATTATAA 47179881 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||| || ||||| || |||||||| |||||||| | | || ||||| || ||| || Sbjct 47179880 TATCCAGAAAGAGTCCACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCATGCAAATTT 47179822 Score = 131 bits (144), Expect = 3e-25 Identities = 174/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| ||||||| | || || ||||| ||||| | ||| | || || | Sbjct 47192114 ATGCAGATTTTTGTAAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 47192055 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || ||| || ||||| ||||| || || || || ||||| Sbjct 47192054 -GATACCATTGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGCATCCCTCCGGATCA 47191996 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||||||||| || |||||| | |||||| | | || | | ||||| || Sbjct 47191995 ACAGAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGAAGGACCCTTGCTGATTACAA 47191936 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| || || ||||| | || ||||| | ||||| |||||||||| ||| || Sbjct 47191935 TATTCAGAAGGAGTCAACCCTTCACTTGGTGCTTCGTTTGAGAGGTGGTATGCAAATTT 47191877 Score = 131 bits (144), Expect = 3e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| |||||| | ||||| || ||||| || || || || | ||| | || ||| Sbjct 48398580 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTAGAGAGCTC 48398521 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| |||| | ||| ||||||||||| || || || || ||||| |||| Sbjct 48398520 -TGATACAATTGATAATGTGAAAGCAAAAATTCAAGACAAGGAGGGCATTCCACCAGATC 48398462 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || |||||||| || ||| |||| || || | ||| || | Sbjct 48398461 AGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACA 48398402 Query 124717 ATATTCAAAAAGAATCAAC 124735 | ||||| || || || || Sbjct 48398401 ACATTCAGAAGGAGTCCAC 48398383 Score = 127 bits (140), Expect = 3e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | ||||| || ||||| || || || || | || | || Sbjct 47183958 AATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAAGTAGAGAGTTC 47183899 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| |||| | ||| || |||||||| || || || || ||||| ||||| Sbjct 47183898 TGATACAATTGATAATGTGAAAGCAAAGATTCAAGACAAGGAGGGCATTCCACCAGATCA 47183839 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||||||||| || |||||||| || ||| |||| || || | ||| || || Sbjct 47183838 GCAAAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAA 47183779 Query 124718 TATTCAAAAAGAATCAAC 124735 ||||| || ||||| || Sbjct 47183778 CATTCAGAAGGAATCCAC 47183761 Score = 122 bits (134), Expect = 1e-22 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || || ||||| ||||| | ||| | || || | Sbjct 17086950 ATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 17087009 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || ||||| ||||| ||||| || || || || ||||| Sbjct 17087010 -GATACCATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAGGGCATCCCTCCGGATCA 17087068 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||||||||| || ||||| | |||||| | |||| | | ||||| || Sbjct 17087069 ACAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTTGCCGATTACAA 17087128 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| || || || || | || ||||| | ||||| |||||||||| ||| || Sbjct 17087129 TATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGGTATGCAAATTT 17087187 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| || || | ||| ||||| | Sbjct 47179831 ATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACCATTACCTTGGAGGTTGAAAGTTCT 47179772 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| |||| || || || || ||||| || || ||||| || || Sbjct 47179771 GATACTATTGATAATGTAAAGGCTAAGATACAGGACAAAGAGGGGATTCCACCAGACCAG 47179712 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || || || |||| ||| | || || | | |||||||| Sbjct 47179711 CAAAGGCTTATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGTACCCTTGCTGATTATAAC 47179652 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| | |||||||| || | | || ||||| || Sbjct 47179651 ATCCAGAAGGAATCCACTCTTCATTTGGTGTTGAGGCTTCGTGGTGGAAT 47179602 Score = 116 bits (128), Expect = 6e-21 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| ||||||| | ||||| || || || ||| | || ||||| Sbjct 47184186 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 47184127 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| |||| | || || || || || ||||| || || ||||| || || Sbjct 47184126 TGATACCATTGATAATGTCAAGNCAAAGATCCAGGACAAAGAGGGNATTCCACCAGACCA 47184067 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || || || | || ||| | ||||| | | |||||||| Sbjct 47184066 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 47184007 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| |||| ||||| || | | || ||||| || Sbjct 47184006 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAAT 47183956 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| ||||||| | ||||| || || || ||| | || ||||| Sbjct 48398808 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 48398749 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| |||| | || || || || || ||||| || || ||||| || || Sbjct 48398748 TGATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCACCAGACCA 48398689 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || || || | || ||| | ||||| | | |||||||| Sbjct 48398688 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 48398629 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| |||| ||||| || | | || ||||| || Sbjct 48398628 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAAT 48398578 >seq591 Length=869021 Score = 140 bits (154), Expect = 5e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | ||||| || ||||| ||||| || || ||||| | ||| Sbjct 242956 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTAGAGGTGGAAAGCTC 242897 Query 124598 TGATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||||||| |||| | || ||| || ||||| || || || || || ||||| |||| Sbjct 242896 TGATACAATTGATAATGTGAAGACA-AAGATTCAGGACAAGGAGGGCATCCCACCAGATC 242838 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || || ||||| || ||| |||| || || | |||||| | Sbjct 242837 AGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGGACCTTGGCAGATTACA 242778 Query 124717 ATATTCAAAAAGAATCAAC 124735 | ||||| |||||||| || Sbjct 242777 ACATTCAGAAAGAATCCAC 242759 Score = 131 bits (144), Expect = 3e-25 Identities = 174/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| ||||||| | || || ||||| ||||| | ||| | || || | Sbjct 243639 ATGCAGATTTTTGTAAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 243580 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || ||||| ||||| || || || || ||||| Sbjct 243579 -GATACCATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCGGATCA 243521 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||||||||| || |||||| | |||||| | | || | | ||||| || Sbjct 243520 ACAGAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGAAGGACCCTTGCTGATTACAA 243461 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||| || ||||| | || ||||| | ||||| |||||||||| ||| || Sbjct 243460 TATTCAAAAGGAGTCAACCCTCCACTTGGTGCTTCGTTTGAGAGGTGGTATGCAAATTT 243402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755432401443200