Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 1e-15 seq5 95.1 2e-14 seq591 89.7 8e-13 >seq7 Length=55601358 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || ||||| || ||||| || ||||| ||||||||||| | | Sbjct 47179833 CCACCACGAAGCCTCAAAACCAAGTGCAAAGTGGACTCTTTCTGGATATTATAATCCGCA 47179892 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || | |||||| |||||||| || | || |||||||| || ||| Sbjct 47179893 AGGGTTCTTCCATCTTCAAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGA 47179952 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || ||||| || Sbjct 47179953 ATACCCTCCTTATCCTG 47179969 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| | ||| ||||| | ||| || | ||||| ||||||||||||| ||| Sbjct 17086903 ATATTGTAATCGGCAAGGGTTCTCCCATCCTCAAGNTGTTTACCAGCAAAAATCAGCCTT 17086844 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||| || || ||||| || || Sbjct 17086843 TGCTGATCCGGAGGGATACCCTCTTTGTCCTG 17086812 >seq5 Length=37180910 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || || ||||| || | |||||||| || ||| |||||||| Sbjct 30312652 GTTCCTCCTCTCAGCCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGTATGTTATAATCA 30312711 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| || | | ||| || | ||| || |||||||||||||| || ||||| || ||| Sbjct 30312712 GCAAGTGTGCGACCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGA 30312771 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||| || || Sbjct 30312772 GGGATACCTTCCTTGTC 30312788 >seq591 Length=869021 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| ||||| | ||| ||||| | ||| || | |||||| ||||||||||||| ||| Sbjct 243686 ATATTGTAATCGGCAAGGGTTCTCCCATCCTCAAGTTGTTTACCAGCAAAAATCAGCCTT 243745 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||| || || ||||| || || Sbjct 243746 TGCTGATCCGGAGGGATACCCTCTTTGTCCTG 243777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743503174094080