Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq4 100 2e-16 seq11 96.9 2e-15 seq5 96.9 2e-15 >seq7 Length=55601358 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||||||||| | || ||| | || ||||| ||||| || || || Sbjct 17087825 TTCTTTCTGAATGTTGTAGTCTGCCAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAA 17087766 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| |||| |||||| || || | || ||||||||| |||||| ||| | || Sbjct 17087765 AATAAGCCTCTGCTGATCTGGTGGGATGCCCTCCTTGTCTTGAATCTTTGTCTTCACATT 17087706 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | ||| || |||| || |||||||| || || ||||| ||||| Sbjct 17087705 ATCAATTGTATCAGAGCTTTCCACCTCCAAGGTAATGGTTTTCCCTGTCAGAGTCTTCAC 17087646 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 17087645 AAATATCTGCAT 17087634 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 |||||| || ||||||||||| | || ||| | || ||||| ||||| || || || Sbjct 47191239 TTCTTTTTGAATGTTGTAGTCTGCCAAGGTACGACCATCTTCCAATTGCTTCCCGGCAAA 47191298 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| |||| ||| || || || | || ||||||||| |||||| ||| | || Sbjct 47191299 AATAAGCCTCTGTTGATCTGGTGGTATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATT 47191358 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | ||| || |||| || || ||||| || || ||||| ||||| Sbjct 47191359 ATCAATTGTATCAGAGCTTTCCACCTCCAAGGTAATTGTTTTCCCTGTCAGAGTCTTCAC 47191418 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 47191419 AAATATCTGCAT 47191430 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || ||||| || | || || ||||| | || ||| ||||| ||||||||||| Sbjct 47183727 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTC 47183786 Query 34219 GGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA 34277 | | || || || | || ||||| || || || || ||||| |||| ||||| || Sbjct 47183787 TGCCAAGGTG-CGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTTTGCTGATCTG 47183845 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336 || | || ||||||||| ||| |||||||| | || | || | ||| | Sbjct 47183846 GTGGAATGCCCTCCTTGTCTTGAATC-TTTGCTTTCACATTATCAATTGTATCAGAACTC 47183904 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||| || ||||| || || || ||||| |||||||| |||||||| Sbjct 47183905 TCTACTTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCAT 47183957 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || ||||| || | || || ||||| | || || ||||| ||||||||||| Sbjct 48398349 GAAGCCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTC 48398408 Query 34219 GGAC-AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA 34277 | | || || || | || ||||| || || || || ||||| |||| |||||| || Sbjct 48398409 TGCCAAGGTG-CGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTG 48398467 Query 34278 CGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGAT 34336 || | || ||||||||| || ||||||||| | || | || | ||| | Sbjct 48398468 GTGGAATGCCCTCCTTGTCTTGAAT-TTTTGCTTTCACATTATCAATTGTATCAGAGCTC 48398526 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||| || ||||| || || || ||||| |||||||| |||||||| Sbjct 48398527 TCTACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCAT 48398579 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||||||||| | ||| ||| || || |||||||| || | Sbjct 37788902 TCCACCACGGAGACGGAGCACCAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCAGC 37788843 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||| ||||| || |||||||| || |||||||| || Sbjct 37788842 AAGGGTACGACCATCCTCAAGCTGTTTGCCAGCAAAAATGAGACGTTGCTGGTCCGGTGG 37788783 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| ||| || ||||| | || | || | ||| | || | Sbjct 37788782 GATTCCTTCCTTGTCTTGAATC-TTGGCTTTCACATTATCAATGGTATCTGAGCTCTCTA 37788724 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || | |||||||| || ||||||||||| || || ||||| |||||| Sbjct 37788723 CTTCGAGAGTGATGGTCTTACCGGTGAGAGTCTTAACGAAGATTTGCATC 37788674 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| |||||| ||| || || |||||||| || | || || | || Sbjct 47184658 AGCACGAGGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCC 47184717 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || || || || || | ||||||||| || | | ||||||||| Sbjct 47184718 TCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCT 47184777 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC----GATTCGACGTCCACCGTGAT 34353 ||||| | ||| | | |||||| ||| ||||| || || | ||||| Sbjct 47184778 TGAATCTT--GGTTTTCAC--GTTATCGATGGTGTCAGAGGATTCAACCTCAAGGGTGAT 47184833 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||||||| | ||||||||| || ||||||||| Sbjct 47184834 GGTTTTGCCGGTCAAAGTTTTCACGAATATCTGCATC 47184870 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | ||| ||| || || |||||||| || | || || | || Sbjct 48399381 AGCACGAGGTGCAGAGTGGATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCC 48399440 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || || || || || | ||||||||| || | | ||||||||| Sbjct 48399441 TCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCT 48399500 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | | | || | |||| ||||| || || | |||||||| Sbjct 48399501 TGAATCTTG-GCTTTCACGTTATCAATGGTGTCGGAGGATTCAACCTCAAGGGTGATGGT 48399559 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||| | ||||||||| || ||||||||| Sbjct 48399560 TTTGCCGGTCAAAGTTTTCACGAATATCTGCATC 48399593 >seq4 Length=20812224 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | ||| |||||||| |||||||| |||| Sbjct 18691278 CCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGCG 18691219 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| ||||| || ||||| |||||||| || || Sbjct 18691218 AGGGTGCGACCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGACGCTGCTGATCTGGTGGA 18691159 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 18691158 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACC 18691099 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 || | |||||||| || || || || ||||||||||| || ||||| || Sbjct 18691098 TCAAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACAAATATTTGCATTGC 18691049 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || || || | ||| |||||||| ||||| ||||||| Sbjct 18688584 CCACCGCGGAGACGGAGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTATAGTCGGCG 18688525 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| |||||||| ||||| || ||||| || || Sbjct 18688524 AGGGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATGAGACGTTGCTGATCTGGTGGG 18688465 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | || | || || || Sbjct 18688464 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCAGAAGACTCCACC 18688405 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| || || ||||||||||| || || ||||||||| || Sbjct 18688404 TCAAGGGTGATGGTCTTCCCCGTGAGAGTTTTGACGAATATCTGCATCCCT 18688354 >seq11 Length=19732206 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | ||| |||||||| ||||||||||||| Sbjct 11449168 CCACCGCGGAGACGGAGGACGAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCG 11449227 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || ||||| ||||| |||||||| || || Sbjct 11449228 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGTGGA 11449287 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | | | || | || | || || || Sbjct 11449288 ATGCCCTCCTTGTCCTGTATCTTGGTCTTGACGTTATCAATGGTGTCAGAAGACTCCACC 11449347 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| || || || |||||||| || || || |||||| || Sbjct 11449348 TCAAGGGTGATGGTCTTCCCCGTAAGAGTTTTTACGAATATTTGCATCCCT 11449398 >seq5 Length=37180910 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | ||| || ||||| ||||||||||||| Sbjct 32956907 CCACCGCGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 32956848 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || ||||| ||||| |||||||| || || Sbjct 32956847 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGG 32956788 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 32956787 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCCACC 32956728 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 || | |||||||| || || || || || || ||||| |||||||| ||| Sbjct 32956727 TCAAGGGTGATGGTCTTCCCCGTAAGGGTCTTGACAAATATCTGCATTGCT 32956677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323062160337440