Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq7 109 4e-19 seq2 109 4e-19 seq5 96.9 3e-15 >seq7 Length=55601358 Score = 109 bits (120), Expect = 4e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || |||||||| || ||| ||||| ||||||||||||||||| ||||| || || ||| Sbjct 31491374 CAGTTTTACGTAGCAAATGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATG 31491315 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| || || || ||||||||| |||||| || || || | |||||||| ||| Sbjct 31491314 GGCCTGGGGGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCCCAT 31491255 Query 20551 GTT 20553 ||| Sbjct 31491254 GTT 31491252 >seq2 Length=25360630 Score = 109 bits (120), Expect = 4e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || |||||||| || ||| ||||| ||||||||||||||||| ||||| || || ||| Sbjct 3054467 CAGTTTTACGTAGCAAATGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATG 3054526 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| || || || ||||||||| |||||| || || || | |||||||| ||| Sbjct 3054527 GGCCTGGGGGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCAT 3054586 Query 20551 GTT 20553 ||| Sbjct 3054587 GTT 3054589 >seq5 Length=37180910 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 20431 CAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATG 20490 || ||||| || || || || || || |||||||||||||| ||||| ||||| ||| Sbjct 23872950 CAGTTTTATGTAGCACATGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATG 23872891 Query 20491 GGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACAT 20550 || ||||| ||||| || ||||||||| |||||| || || || | |||||| | ||| Sbjct 23872890 GGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTACTGACATGCATGATTTCTCAT 23872831 Query 20551 GTT 20553 ||| Sbjct 23872830 GTT 23872828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399171842227555