Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1155 104 5e-17 seq1493 91.5 3e-13 seq1 84.2 5e-11 >seq1155 Length=2458243 Score = 104 bits (114), Expect = 5e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| ||| ||| ||| | || || || || || |||| |||| |||||||| | Sbjct 1421527 TGGACAGCGAGATAATCTATGACAGGGACTTCGACTATGATTATTTTGGGTTCAAAACCC 1421468 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| || || ||| | || || | || ||| |||||||| | || ||||||| Sbjct 1421467 TTGAGAGGTCTTACCTCTTAAAGGTTCAAGGGAAGGTCGTGGAAAGGCCGCAACACATGT 1421408 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGA 248942 ||||| |||| || || ||||||||||||||||||||||| Sbjct 1421407 TGATGAGAGTCGCGGTTGGGATTCACAAGGATGACATAGA 1421368 >seq1493 Length=4971659 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/107 (80%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 |||||| |||| | ||||| || ||||||||||| ||||| || ||||||| ||||| Sbjct 4757851 GTACTCCCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAAATCAGCTCCAT 4757792 Query 157318 CCACTCGAATGGGTTG-GCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 ||| ||||||||||| || || ||||||||||| || |||| ||| Sbjct 4757791 CCAATCGAATGGGTTCTGCACA-TTGTACACCTTCCCGCACCCAAGC 4757746 >seq1 Length=36501346 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| |||| ||||||||| || |||| || || ||| | || || Sbjct 21164748 GACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTT 21164689 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | |||||| || || |||||||||||| | || ||||| || ||||| Sbjct 21164688 CAAGGTAAGGTGGTGGAAAGACCACAACACATGTTGATGAGGGTTGCTGTTGGAATTCAT 21164629 Query 248929 AAGGATGACATAGA 248942 ||||| ||||| || Sbjct 21164628 AAGGAAGACATCGA 21164615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073732019677632