Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7 96.9 3e-15 seq591 91.5 1e-13 >seq7 Length=55601358 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||| || ||||||||||||||||||||||| ||| Sbjct 47191204 CCACCACGAAGGCGAAGGACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAGTCTGCC 47191263 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||||||| || || ||| | ||||| || |||||||| || Sbjct 47191264 AAGGTACGACCATCTTCCAATTGCTTCCCGGCAAAAATAAGCCTCTGTTGATCTGGTGGT 47191323 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || ||| | | ||| || | ||| || ||| | || Sbjct 47191324 ATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATTATCAATTGTATCAGAGCTTTCCACC 47191383 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| || |||| || |||| || || ||||| || |||||| Sbjct 47191384 TCCAAGGTAATTGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 47191431 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || || ||||| || |||||||||||||| ||| Sbjct 47183731 CCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCC 47183790 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| | ||||| ||||| ||||| || Sbjct 47183791 AAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTTTGCTGATCTGGTGGA 47183850 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || ||| | |||| || || | ||| || ||| ||| Sbjct 47183851 ATGCCCTCCTTGTCTTGAATCT-TTGCTTTCACATTATCAATTGTATCAGAACTCTCTAC 47183909 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||| ||| | || || |||| || || ||||| || |||||| Sbjct 47183910 TTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 47183958 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||||| || |||||||| |||||||||||||| ||| Sbjct 17087860 CCACCACGAAGGCGAAGGACAAGATGAAGGGTGGATTCTTTCTGAATGTTGTAGTCTGCC 17087801 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||||||| || || ||| | ||||| || || ||||| || Sbjct 17087800 AAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGG 17087741 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || ||| | | ||| || | ||| || ||| | || Sbjct 17087740 ATGCCCTCCTTGTCTTGAATCTTTGTCTTCACATTATCAATTGTATCAGAGCTTTCCACC 17087681 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| || |||| || || ||||| || |||||| Sbjct 17087680 TCCAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 17087633 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| || || || || || |||||||||||||| ||| Sbjct 48398353 CCACCGCGAAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGCC 48398412 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || ||| | ||||| || || ||||| || Sbjct 48398413 AAGGTGCGACCATCTTCCAATTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGA 48398472 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| ||||| || ||||| |||| || || | ||| || ||| | ||| Sbjct 48398473 ATGCCCTCCTTGTCTTGAATTT-TTGCTTTCACATTATCAATTGTATCAGAGCTCTCTAC 48398531 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| | || || |||| || || ||||| || |||||| Sbjct 48398532 CTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 48398580 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| || || ||||| ||||| |||||||| || || | || || ||| Sbjct 48399380 AAGCACGAGGTGCAGAGTGGATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATC 48399439 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | ||| || |||||| |||||||||| || || || || | || ||||| || Sbjct 48399440 CTCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTC 48399499 Query 18233 GGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||| | | |||| || | ||| ||||| || || |||| ||||||| Sbjct 48399500 TTGAATCT-TGGCTTTCACGTTATCAATGGTGTCGGAGGATTCAACCTCAAGGGTGATGG 48399558 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||||||||| ||||| || || || ||||| Sbjct 48399559 TTTTGCCGGTCAAAGTTTTCACGAATATCTGCAT 48399592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | ||| | || ||||| ||||| |||||||| || || Sbjct 47184643 CCACCCCTGAGGCGAAGCACGAGGTGCAAAGTAGATTCCTTTTGGATGTTGTAATCCGCA 47184702 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | ||| || |||||| |||||||||| || || || || Sbjct 47184703 AGAGTGCGACCATCCTCGAGTTGCTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGG 47184762 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||| ||| | || || | | | |||||| || || Sbjct 47184763 ATACCCTCCTTGTCTTGAATCTTGGTT-TTCACGTTATCGATGGTGTCAGAGGATTCAAC 47184821 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| ||||||||||||| ||||| || || || ||||| Sbjct 47184822 CTCAAGGGTGATGGTTTTGCCGGTCAAAGTTTTCACGAATATCTGCAT 47184869 >seq591 Length=869021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || |||||||| ||||||||||| || ||| Sbjct 242729 CCACCACGAAGGCGAAGGACAAGGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCTGCC 242788 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||||||||| || || ||| | ||||| || || ||||| || Sbjct 242789 AAGGTCCGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGG 242848 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || ||| | | ||| || | ||| || ||| | || Sbjct 242849 ATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATTATCAATTGTATCAGAGCTTTCCACC 242908 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||| ||| |||| || |||| || || ||||| || |||||| Sbjct 242909 TCTAAGGTAATGGTTTTCCCTGTCAGAGTCTTCACAAATATCTGCATT 242956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379332446485755