Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1493 152 7e-32 seq3 120 4e-22 seq1 95.1 2e-14 >seq1493 Length=4971659 Score = 152 bits (168), Expect = 7e-32 Identities = 387/581 (67%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| |||||||| ||||||||||||| || | ||||||||| || |||||| Sbjct 4757565 CAAGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 4757506 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAAAGAA 36276 || ||||| ||||| || || || |||||||| ||||| ||||| | ||| || ||||| Sbjct 4757505 CCTGGCATGAGGCCCCGTTTCTTGAGCCAAAAGATGGA-GCAAAAGCTTCCGGAGAAGAA 4757447 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCACTGTCATG 36333 ||||| || || || ||||| | || | ||| | | || ||| ||| Sbjct 4757446 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGTC--- 4757390 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | ||||| | ||||||||| | || || || || || || || || | Sbjct 4757389 GATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTG 4757330 Query 36394 AAAGAGATAGtttttttCATTAC--TATCTTTAACATATGTATCAATCAAAAGACTATAC 36451 ||||||| | |||| || ||| ||||| | || || || | | || || ||| Sbjct 4757329 AAAGAGACGGCTTTTCTC--TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTAC 4757272 Query 36452 ATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTA 36511 || || || |||||||| || || || || || || ||||| || | |||||||| Sbjct 4757271 ATCTCGGAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAG 4757212 Query 36512 ATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 | ||| || || | ||| || | || | |||||| || || ||||| ||| Sbjct 4757211 ACCTGGACCTCCTTCATAAAACGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAGGCA 4757152 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA 36631 || || || || | ||||| | | |||| ||| || || | ||||| Sbjct 4757151 GCGAAGAAGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAG 4757092 Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691 | | |||| || | || | ||||| || ||| | ||||| || || || ||||| || Sbjct 4757091 TGACTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCTTCTGCTTTC 4757032 Query 36692 TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || ||||| | |||||| | | |||||||| || || || Sbjct 4757031 TTGTACATTTCCCAGATTTGGGGGTATTGAATAGGGAACAT 4756991 >seq3 Length=12950713 Score = 120 bits (132), Expect = 4e-22 Identities = 240/353 (68%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| |||||||| || || || |||| || | ||||||||| || ||||| Sbjct 6095749 CACGCGAAGTCGCAGTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGA 6095690 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 |||||||| | ||||||||| || ||||||||||| || ||| | | | || || ||||| Sbjct 6095689 CCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 6095631 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 ||||| || || || ||||| | || | ||| | | | | || ||| || Sbjct 6095630 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGGTGGCATCGAT 6095571 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| ||||| | ||||||||| ||||| || || || || | || || Sbjct 6095570 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAA 6095511 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 |||| || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 6095510 CAGATGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 6095451 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 || || ||||| || ||||| || || || ||||||||| | |||||||| Sbjct 6095450 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGAGCCTCGG 6095398 >seq1 Length=36501346 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 21164179 TCCCCCTTGATCCACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAAGAATACC 21164238 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || ||| || || || | ||||||||||| || || Sbjct 21164239 ATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 21164298 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTATCATAGA 66393 | ||| ||||| || || ||| | | |||| || || || || || ||||| | Sbjct 21164299 AACACCAATTCCACCAGCTGATTT-GCTAATAATAGCACACTCCTTCAAAGTGTCATATA 21164357 Query 66394 TGCCCTCTATACTATCATCCATCATG 66419 | ||||||||||||||||| ||||| Sbjct 21164358 TTCCCTCTATACTATCATCTTTCATG 21164383 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 |||||||||||||| | || ||||| || || || ||||| || ||| | || | | Sbjct 21164537 GTTCCCGCATTAAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATAAGGTGG 21164596 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || | | ||| || || || || | ||||||||| || || || | ||| ||| Sbjct 21164597 TATGTTTTGACAGCAGAATCGATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 21164656 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||| || |||||||| || | ||| | | || || | |||||| | || | Sbjct 21164657 ATGTGTTGTGGTCTTTCCACCACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 21164716 Query 66636 GTTTTAAAACCAAAATA 66652 ||||| ||||||||||| Sbjct 21164717 GTTTTGAAACCAAAATA 21164733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658152240327160