Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1493 188 1e-42 seq3 152 7e-32 seq1 95.1 2e-14 seq1155 87.8 3e-12 >seq1493 Length=4971659 Score = 188 bits (208), Expect = 1e-42 Identities = 395/581 (68%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| ||||||||||||| || ||||||||||| || |||||| Sbjct 4757565 CAAGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 4757506 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 || ||||| ||||| || || || |||||||| ||||| ||||| | || || ||||| Sbjct 4757505 CCTGGCATGAGGCCCCGTTTCTTGAGCCAAAAGATGGA-GCAAAAGCTTCCGGAGAAGAA 4757447 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCGCTGTCATG 50135 |||||| || || ||| ||||| || || | ||| | | ||| || | ||| Sbjct 4757446 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGTC--- 4757390 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | ||||| | ||||||||| | || || || || || || ||||| | Sbjct 4757389 GATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGTG 4757330 Query 50196 AAAGAGATAGtttttttCATTAC--TATCTTTAACATAAGTATCGATCAAAAGACTATAC 50253 ||||||| | |||| || ||| ||||| | || || |||| | || || ||| Sbjct 4757329 AAAGAGACGGCTTTTCTC--TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTAC 4757272 Query 50254 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 50313 || || || |||||||| || || || ||||| || ||||| || | |||||||| Sbjct 4757271 ATCTCGGAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGAG 4757212 Query 50314 ATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 | ||| || || | ||| || | || | |||||| || || ||||| ||| Sbjct 4757211 ACCTGGACCTCCTTCATAAAACGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAGGCA 4757152 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA 50433 || || || || | ||||| | | ||||| ||| | || || | ||||| Sbjct 4757151 GCGAAGAAGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCAG 4757092 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 | | |||| || | || | || || || ||| | ||||| || || || ||||| || Sbjct 4757091 TGACTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCTTCTGCTTTC 4757032 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 || ||||| | |||||| | | ||||| || ||||| || Sbjct 4757031 TTGTACATTTCCCAGATTTGGGGGTATTGAATAGGGAACAT 4756991 >seq3 Length=12950713 Score = 152 bits (168), Expect = 7e-32 Identities = 381/576 (66%), Gaps = 2/576 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || || || |||| || ||||||||||| || ||||| Sbjct 6095749 CACGCGAAGTCGCAGTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGA 6095690 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAA 50078 |||||||| | ||||||||| || ||||||||||| || ||| | | || || ||||| Sbjct 6095689 CCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCGA-GCAGAAGCTGCCGGAGAAGAA 6095631 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 |||||| || || ||| ||||| || || | ||| | | | || || ||| || Sbjct 6095630 GATTCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGGTGGCATCGAT 6095571 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| ||||| | ||||||||| ||||| || || || || | ||| || Sbjct 6095570 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAA 6095511 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 |||| || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 6095510 CAGATGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 6095451 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || || ||||| || ||||| ||||| || ||||||||| | |||||||| || Sbjct 6095450 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGAGCCTCGGCGGCTTG 6095391 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 | ||| | || || | || | ||||| || || ||||| ||| ||||| Sbjct 6095390 GATTTCCTTCATGAAGCGGGCGGCAAGGTTTTCGAGAACGATGCCGTCGGAGGCGGCAAA 6095331 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 || || | || || | || || || ||| | || || | ||| | Sbjct 6095330 GAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGGTGAGGGAGTCCCAGTGGCG 6095271 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 || |||| || | || || ||||| ||||||| || || || || || || || || Sbjct 6095270 GAGGTCTTGGGAGAGGTCAACCTCTTCGGCTGTCCAGAAAGAGGCTTCGGCTTTCTTGTA 6095211 Query 50499 CATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||| | |||||| | | |||||||||||||| || Sbjct 6095210 CATTTCCCAGATTTGGGGGTATTGGATTGGGAACAT 6095175 >seq1 Length=36501346 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 21164179 TCCCCCTTGATCCACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAAGAATACC 21164238 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || ||| || || || ||||||||||||| || || Sbjct 21164239 ATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 21164298 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTATCATAGA 80272 | ||| ||||| || || ||| | | |||| || || || || || ||||| | Sbjct 21164299 AACACCAATTCCACCAGCTGATTT-GCTAATAATAGCACACTCCTTCAAAGTGTCATATA 21164357 Query 80273 TGCCCTCTATGCTATCATCAATCATG 80298 | |||||||| |||||||| ||||| Sbjct 21164358 TTCCCTCTATACTATCATCTTTCATG 21164383 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 |||||||||||||| | || ||||| || || || ||||| || ||||| || | | Sbjct 21164537 GTTCCCGCATTAAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATAAGGTGG 21164596 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || | | ||| || || || || | ||||||||| || || || | ||| ||| Sbjct 21164597 TATGTTTTGACAGCAGAATCGATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 21164656 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| || |||||||| || | ||| | | || || | ||| || | || | Sbjct 21164657 ATGTGTTGTGGTCTTTCCACCACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 21164716 Query 80515 GTTTTAAAACCAAAATA 80531 ||||| ||||||||||| Sbjct 21164717 GTTTTGAAACCAAAATA 21164733 >seq1155 Length=2458243 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| |||||||| | || | || || | ||| | || | |||||||||| ||| || Sbjct 1420942 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGTAACATTGGAACAATGCC 1421001 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||| || ||||| ||||| ||||| || || | |||||||| || | || Sbjct 1421002 GTTGGACGTCCCATTTGTCCCACGAATATAACTGCCCGTAGCACGAATGTTGTGGACAGA 1421061 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || |||| || | || || || || || ||||| || Sbjct 1421062 GACACCGATTCCTCCAGCTGATTTACTTATGATAGCACACTCCTTCAAAGTTTCATATAT 1421121 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 |||||||||||||||||| ||||| | || || |||||| Sbjct 1421122 CCCCTCTATGCTATCATCATTCATGCACACAAGGAAGCAGCTA 1421164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718246363078360