Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq591 86.0 5e-12 seq7 84.2 2e-11 >seq591 Length=869021 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || || || ||||| || | |||| ||||| || | || ||||| | Sbjct 243184 GCCACCACGAAGCCTCAAAACCAAGTGCAAAGTGGATTCCTTCTGTATGTTATAATCCGC 243243 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | |||| || | ||||| |||||||| || | | ||| ||||| | || Sbjct 243244 AAGGGTCCTTCCGTCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGGGG 243303 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||| || || || |||| || |||| || || ||| ||| || | ||| | Sbjct 243304 TATACCCTCCTTATC-CTGAATCTTAGCTTTCACATTGTCAATTGTATCTGAACTCTCCA 243362 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||| |||||||| || | ||| || |||||||||||||| Sbjct 243363 CTTCCAAGGTTATGGTTTTTCCTGTCAAAGTCTTGACAAAAATTTGCAT 243411 >seq7 Length=55601358 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| ||| |||||| || | |||||||| | | || | |||| || Sbjct 47180079 ACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTACCGTCCTCA 47180138 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| || || ||||||| | ||| ||||| | || | |||||||| || | Sbjct 47180139 AGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGG 47180198 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||||| | ||| || ||| | || || || | || ||||||||| Sbjct 47180199 ATCTTAGCCTTGACATTATCAATGGTATCGGAGGATTCCACCTCGAGGGTGATAGTTTTT 47180258 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| | ||||||||| || |||||||| Sbjct 47180259 CCGGTCAAAGTTTTCACGAAGATTTGCAT 47180287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381357984792942