Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq591 98.7 1e-15 seq7 98.7 1e-15 seq11 86.0 6e-12 seq5 86.0 6e-12 seq4 82.4 8e-11 >seq591 Length=869021 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || || ||||||||| | || ||| || || |||||||||||| Sbjct 243671 GTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATCCTCAAGTTGTTTACCA 243730 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | ||||| | ||||||||| ||||| || || |||||||| || || || Sbjct 243731 GCAAAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTG 243790 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||||||||||| || | |||||||| ||||| ||| Sbjct 243791 ACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTTATGGTCTTGCCAGTCAAAGTT 243850 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 243851 TTCACAAAGATCTGCAT 243867 >seq7 Length=55601358 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||| ||||| ||||||||||| | |||| || |||||||| ||||| Sbjct 47184673 GTAGATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGCTTACCC 47184732 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | ||||| || || || || || || ||||| ||| || ||| Sbjct 47184733 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGTTTTC 47184792 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| || |||| || | || ||||||||||| ||| Sbjct 47184793 ACGTTATCGATGGTGTCAGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTCAAAGTT 47184852 Query 143168 TTTACGAATATTTGCAT 143184 || |||||||| ||||| Sbjct 47184853 TTCACGAATATCTGCAT 47184869 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || || ||||||||| || || ||| || || || ||||||||| Sbjct 47192146 GTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTTCTCCCATCCTCAAGCTGTTTACCA 47192205 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | ||||| | ||||||||| ||||| || || |||||||| || || || Sbjct 47192206 GCAAAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTG 47192265 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||||||||||| || | |||||||| ||||| ||| Sbjct 47192266 ACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTTATGGTCTTGCCAGTCAAAGTT 47192325 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 47192326 TTCACAAAGATCTGCAT 47192342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || || ||||||||| | || ||| || || || ||||||||| Sbjct 17086918 GTGGACTCCTTCTGAATATTGTAATCGGCAAGGGTTCTCCCATCCTCAAGNTGTTTACCA 17086859 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | ||||| | ||||||||| ||||| || || |||||||| || || || Sbjct 17086858 GCAAAAATCAGCCTTTGCTGATCCGGAGGGATACCCTCTTTGTCCTGGATCTTAGCCTTG 17086799 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||||||||||| || | |||||||| ||||| ||| Sbjct 17086798 ACATTATCAATGGTGTCAGACGATTCTACTTCAAGGGTTATGGTCTTGCCAGTCAAAGTT 17086739 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 17086738 TTCACAAAGATCTGCAT 17086722 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| ||||||||||| | |||| || |||||||| ||||| Sbjct 48399396 GTGGATTCCTTTTGGATGTTGTAATCCGCAAGAGTGCGACCATCCTCGAGTTGCTTACCC 48399455 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | ||||| || || || || || || ||||| ||| || ||| Sbjct 48399456 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTGGCTTTC 48399515 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| || |||| || | || ||||||||||| ||| Sbjct 48399516 ACGTTATCAATGGTGTCGGAGGATTCAACCTCAAGGGTGATGGTTTTGCCGGTCAAAGTT 48399575 Query 143168 TTTACGAATATTTGCAT 143184 || |||||||| ||||| Sbjct 48399576 TTCACGAATATCTGCAT 48399592 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||| | ||| || || | || || || || || ||||||||||| | || || Sbjct 47180070 AAACGAAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTA 47180129 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||| || |||||||||||||| | ||||| | |||||||| ||||| || |||||| Sbjct 47180130 CCGTCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGGATTCCTTCT 47180189 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| || || || | | || | || || | || ||| || || | || Sbjct 47180190 TTGTCCTGGATCTTAGCCTTGACATTATCAATGGTATCGGAGGATTCCACCTCGAGGGTG 47180249 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || |||||||| ||||| ||||| |||||||| Sbjct 47180250 ATAGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCAT 47180287 >seq11 Length=19732206 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| |||| ||| | || | ||| | || || || || || |||||||| || | Sbjct 461764 CCTCCACGTAGACGGAGGACCAGATGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCC 461823 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || ||||| || || || |||||| ||| ||||| || || || Sbjct 461824 AGGGTGCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGA 461883 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| |||| | || | ||||| | || || Sbjct 461884 ATCCCTTCTTTGTCCTGAATTTTGGACTTTACGTTGTCGATGGTGTCGGAACTCTCCACC 461943 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || ||||| || || ||||| |||||||| Sbjct 461944 TCAAGAGTTATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 461990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || |||||||| ||| | |||| ||| |||||||| || || Sbjct 11449198 GTGGACTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCCTCGAGTTGCTTTCCG 11449257 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG-GTAATTTTTTGTTT 143106 || |||| ||||| |||||||| || || ||||| || ||||| ||| | || || | Sbjct 11449258 GCGAAGATGAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGTA--TCTTGGTCT 11449315 Query 143107 TAGCTGT-TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | | || | ||||| | | || || |||| || | ||||| || || | | Sbjct 11449316 TGACGTTATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGAG 11449375 Query 143166 TTTTTACGAATATTTGCAT 143184 ||||||||||||||||||| Sbjct 11449376 TTTTTACGAATATTTGCAT 11449394 >seq5 Length=37180910 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 142953 CATGG--CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTA 143010 ||||| ||||||| | | ||| || || |||| |||||||| ||||||||||| || Sbjct 30312648 CATGGTTCCTCCTCTCAGCCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGTATGTTATA 30312707 Query 143011 ATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 143070 ||| | ||||| ||||| ||||| ||||||||| | |||| | ||||| || Sbjct 30312708 ATCAGCAAGTGTGCGACCATCTTCCAGTTGCTTACCAGCAAAAATCAACCTCTGCTGGTC 30312767 Query 143071 GGGAGGTATGCCTTCTTTGTC 143091 ||||| || ||||| ||||| Sbjct 30312768 AGGAGGGATACCTTCCTTGTC 30312788 >seq4 Length=20812224 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || |||||||||||| | |||| ||| ||||| || || || Sbjct 18691248 GTGGACTCTTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCGAGCTGCTTTCCT 18691189 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| |||||||| || || ||||| || ||||| ||| || || Sbjct 18691188 GCAAAGATGAGACGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 18691129 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || |||| || | ||||| || || | ||| Sbjct 18691128 ACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTAAGGGTT 18691069 Query 143168 TTTACGAATATTTGCATAGC 143187 || || ||||||||||| || Sbjct 18691068 TTCACAAATATTTGCATTGC 18691049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506998562137680