Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 150 3e-31 seq1493 147 3e-30 >seq3 Length=12950713 Score = 150 bits (166), Expect = 3e-31 Identities = 379/562 (67%), Gaps = 22/562 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||||||||||||| || || | ||||| || ||||| | ||||||||| || || Sbjct 6095199 ATCTGGGAAATGTACAAGAAAGCCGAAGCCTCTTTCTGGACAGCCGAAGAGGTTGACCTC 6095258 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| | ||||| | | ||||| | | | || || ||||| | || || | Sbjct 6095259 TCCCAAGACCTCCGCCACTGGGACTCCC---TCACCGACGGCGAGCGCCACTTCATCACC 6095315 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | ||||||||||||| |||||| || ||||| ||| || || | || Sbjct 6095316 CACGTCCTCGCCTTCTTTGCCGCCTCCGACGGCATCGTTCTCGAAAACCTTGCCGCCCGC 6095375 Query 125199 TTCTCTCAAGAGTTGACCATTCCA--GAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | || | ||| || |||| ||||||||| ||||| ||||| ||| Sbjct 6095376 TTCATGAAGGAAAT--CCAAGCCGCCGAGGC-TCGTGCTTTCTACGGCTTCCAGATCGCC 6095432 Query 125256 ATTGAGAACGTGCACTCGGAAATGTAC--TCTACACTGATTGACATGTACATTCGCGATC 125313 || |||||| | ||||| || |||||| ||| | || | || | ||||| || Sbjct 6095433 ATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCT--TGGAAACCTACATCAAAGACT 6095490 Query 125314 CGCAACGTAAACA--CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 | || || ||| | ||| || || ||| |||| || | || | | | || || Sbjct 6095491 C-CACCGAAAAGAATCAT-CTGTTCCGCGCCGTCGATACCATCCCCTGTGTCGCCAAGAA 6095548 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 ||| ||||||| | || |||||||||| | | | || | |||||| | || || Sbjct 6095549 GGCCCAATGGGCCTTGCGCTGGATCGATGCCACCGACTCCTT---CGCCGAGCGCCTCGT 6095605 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGC 125490 || |||||| ||| ||||| |||||||| || || || || ||| | || ||||||| Sbjct 6095606 CGCCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGCAGCTTCTGCT-CGATATTTTGGC 6095664 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || | |||||||| || || | ||||| | ||||| ||||| | Sbjct 6095665 TCAAGAAGCGTGGCTTGATGCCCGGTCTCACCTTCTCCAACGAACTCATATCGCGAGATG 6095724 Query 125551 AGGGCCTACACTGTGACTTTGC 125572 | || || ||||| ||||| || Sbjct 6095725 AAGGGCTCCACTGCGACTTCGC 6095746 >seq1493 Length=4971659 Score = 147 bits (162), Expect = 3e-30 Identities = 378/560 (68%), Gaps = 18/560 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || |||||||||||||| || || | |||||||| ||||||| || ||||| || || Sbjct 4757015 ATCTGGGAAATGTACAAGAAAGCAGAAGCCTCCTTCTGGACGGCGGAGGAGGTGGACCTC 4757074 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| | | ||| | |||| | || || ||||| | || | | Sbjct 4757075 TCGCAGGACATCAGTCACTGGAACACTCTT---ACCGACGGCGAGCGCCATTTCGTCACC 4757131 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA-CG 125197 || | | |||||||| || | |||||| || ||||| ||| ||||| || | | Sbjct 4757132 CATGTCCTTGCCTTCTTCGCTGCCTCCGACGGCATCGTACTCGAAAATCT--TGCCGGCC 4757189 Query 125198 ATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGC-TTTTACGGATTCCAAATCAT 125254 || | | ||| | | ||| || | |||| ||| || |||||||| ||||| ||| Sbjct 4757190 GTTTTATGAAG-GAGGTCCAGGTCTCCGAGGC-TCGCGCCTTTTACGGCTTCCAGATCGC 4757247 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA-TC 125313 || |||||| | ||||| || |||||| || | || | ||||| || || Sbjct 4757248 TATAGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAAACCTACATAAAAGACTC 4757307 Query 125314 CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 || | | ||| | | |||||| |||| || ||||| | || | | || |||| Sbjct 4757308 CGTAGAGAAAAGCCGT-CTCTTTCACGCCATTGACACCATTCCCTGCGTCACCAAGAAGG 4757366 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 | | |||| | || |||||||| | | |||| | |||||| | || || | Sbjct 4757367 CCAACTGGGCCCTCCGCTGGATCGACTCCTCCGAGTCCTT---CGCCGAGCGCCTCGTCG 4757423 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTC 125492 | |||||| ||| ||||| |||||||| || || || |||||| |||||||||||||| Sbjct 4757424 CCTTCGCCTGCGTCGAGGGAATCTTCTTCTCCGGAAGCTTTTGCT-CCATCTTTTGGCTC 4757482 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| || || |||||||| ||||| || | ||||| | || || ||||||||| Sbjct 4757483 AAGAAACGGGGCCTCATGCCAGGACTCACTTTCTCCAACGAACTCATCTCCCGAGACGAG 4757542 Query 125553 GGCCTACACTGTGACTTTGC 125572 || || ||||| ||||| || Sbjct 4757543 GGTCTCCACTGCGACTTCGC 4757562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741036051163240