Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-16 seq591 91.5 1e-13 >seq7 Length=55601358 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| | | |||||| || || ||| ||| || |||||||| |||||| Sbjct 17087177 ACCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGC 17087118 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | |||| || | ||||| || ||||| || | || || || ||| |||| Sbjct 17087117 AAGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAGG 17087058 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| ||||| ||||| || ||| ||||||| |||||| Sbjct 17087057 GATGCCCTCTTTGTCTTGGATTTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCAC 17086998 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || |||||||||||||| || ||||| Sbjct 17086997 CTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTCACAAAAATCTGCAT 17086950 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || ||||| || | ||| |||||| || ||||||||||| | | || Sbjct 47179845 CTCAAAACCAAGTGCAAAGTGGACTCTTTCTGGATATTATAATCCGCAAGGGTTCTTCCA 47179904 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | |||||| || ||||| || | || ||||| || | || | ||| || ||| Sbjct 47179905 TCTTCAAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGAATACCCTCCTTA 47179964 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || ||| || |||||| || ||| ||||||| |||||| || | ||||| Sbjct 47179965 TCCTGAATCTTGGCTTTGACATTATCAATGGTATCTGAACTCTCCACCTCCAAGGTAATA 47180024 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| ||||| |||||||| ||||| ||||||||| Sbjct 47180025 GTTTTCCCGGTCAAAGTCTTGACAAAGATTTGCATG 47180060 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTC 43965 || |||||||| ||||| ||| || || || || |||||||| | || | |||| | Sbjct 47191444 CTCAACACCAAGTGTAGAGTGGATTCCTTCTGGATGTTATAATC-TGCAAGGGTACGCCC 47191502 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| |||| || || || ||||| || | | ||||||||| | || | ||||| || Sbjct 47191503 ATCTTCCAGCTGCTTCCCAGCAAAGATAAGTCTCTGCTGGTCCGGTGGAATGCCTTCCTT 47191562 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 || ||| ||| || || | ||| ||| || | || || || | || || Sbjct 47191563 GTCCTGAATCTTTGCCTTTACATTGTCAATAGTGTCAGAGCTTTCAACCTCCAGAGTTAT 47191622 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| |||||||||||||||||||| || |||||| Sbjct 47191623 GGTTTTCCCGGTTAAAGTCTTCACAAAAATCTGCATG 47191659 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||| || || ||| || ||||| || || ||||| | ||| |||| || Sbjct 37788884 CACCAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAATCAGCAAGGGTACGACCATCCTC 37788825 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | ||||| || ||||| || | |||||||||||| | || | ||||| || ||| Sbjct 37788824 AAGCTGTTTGCCAGCAAAAATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTG 37788765 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || ||| || || ||| ||||||| ||| || |||| || || || || Sbjct 37788764 AATCTTGGCTTTCACATTATCAATGGTATCTGAGCTCTCTACTTCGAGAGTGATGGTCTT 37788705 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| | |||||| || || |||||||| Sbjct 37788704 ACCGGTGAGAGTCTTAACGAAGATTTGCAT 37788675 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| ||||||||||| || || || || ||| |||| |||||||| Sbjct 47191227 ATGAAGGGTGGATTCTTTTTGAATGTTGTAGTCTGCCAAGGTACGACCATCTTCCAATTG 47191286 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT-CTGAAATTT 44036 || || ||||| || | || || || || | |||| || || || | ||||| | Sbjct 47191287 CTTCCCGGCAAAAATAAGCCTCTGTTGATCTGGTGGTATGCCCTCCTTGTCCTGAA--TC 47191344 Query 44037 TTTGT-TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCG 44095 ||||| || || || ||| ||||| | ||||| || | ||||||||||| || Sbjct 47191345 TTTGTCTTCACATTATCAATTGTATCAGAGCTTTCCACCTCCAAGGTAATTGTTTTCCCT 47191404 Query 44096 GTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||||||| ||||| Sbjct 47191405 GTCAGAGTCTTCACAAATATCTGCAT 47191430 >seq591 Length=869021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| | | |||||| || || || ||| ||||||||||| ||||| Sbjct 243412 ACCACCTCTCAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATC-AG 243470 Query 43954 TAATTGACGCT-CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | | | |||| || | |||||| || ||||| || | || || || ||| ||| Sbjct 243471 CAAGGGTCCTTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAG 243530 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | || ||||| ||| || || ||||| || ||| ||||||| ||||| Sbjct 243531 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCA 243590 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || ||||| || || |||||||| ||||| || ||||| Sbjct 243591 CCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 243639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354766794693852