Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq5 91.5 1e-13 seq11 89.7 4e-13 seq4 87.8 2e-12 seq591 82.4 6e-11 >seq7 Length=55601358 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || || ||| |||||| ||||||||||||||||| | || ||||||| Sbjct 47180079 ACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTACCGTCCTCA 47180138 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || || ||||| || |||| | | |||||||||| || | | ||| |||||| Sbjct 47180139 AGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCCGGAGGGATTCCTTCTTTGTCCTGG 47180198 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| || ||| ||||| || || ||||| Sbjct 47180199 ATCTTAGCCTTGACATTATCAATGGTATCGGAGGATTCCACCTCGAGGGTGATAGTTTTT 47180258 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||||| | ||||||||| || || |||||| Sbjct 47180259 CCGGTCAAAGTTTTCACGAAGATTTGCATC 47180288 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | | ||| || || || ||| |||||| ||||| |||||||| || Sbjct 17087177 ACCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGC 17087118 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | | ||||| ||||| ||||| | |||| | | ||| |||||| || Sbjct 17087117 AAGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAGG 17087058 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || ||||| ||||| ||||| | | |||||||| | | |||| Sbjct 17087057 GATGCCCTCTTTGTCTTGGATTTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCAC 17086998 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||||||||| || || | ||| ||||||||||||||||| Sbjct 17086997 CTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTCACAAAAATCTGCAT 17086950 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || | ||| ||||| || || || ||| ||||| |||||||| ||||| || Sbjct 47179377 CCACCACGAAGCCTCAACACCAAGTGCAGAGTGGATTCCTTCTGAATGTTATAATCTGC- 47179435 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || ||| | || ||||||||||| || | | || | | |||||| || ||| Sbjct 47179436 AAGGGTACGCCCATCTTCCAGCTGCTTCCCAGCAAAGATAAGTCTCTGCTGGTCAGGCGG 47179495 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||| || ||| | | |||| || || | || Sbjct 47179496 GATGCCTTCCTTGTCCTGAATCTTTGCCTTTACATTGTCTATAGTGTCAGAGCTTTCAAC 47179555 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | |||||||||||| || || | ||| ||||||||||||||||| Sbjct 47179556 CTCCAATGTTATGGTTTTCCCAGTTAAAGTCTTCACAAAAATCTGCAT 47179603 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||||| | ||| || || || ||| |||||| ||||| |||||||| || Sbjct 47192115 ACCACCCCTCAACCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATATTGTAATCGGC 47192174 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | | ||||| ||||| ||||| | |||| | | ||||||||| || Sbjct 47192175 CAGGGTTCTCCCATCCTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCCGGAGG 47192234 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || || |||||| || || ||||| | | ||||| || | || || Sbjct 47192235 GATACCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCAGACGATTCTAC 47192294 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | |||||||| || || || | |||||||||||| ||||||||| Sbjct 47192295 TTCAAGGGTTATGGTCTTGCCAGTCAAAGTTTTCACAAAGATCTGCATC 47192343 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | | ||| || ||||| || |||||| ||||| ||||||||||| Sbjct 47191887 ACCACCTCTCAAACGAAGCACCAAGTGAAGGGTTGACTCCTTCTGAATATTGTAATCAGC 47191946 Query 48559 CAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||| || || ||||| | |||| | | ||| |||||| | Sbjct 47191947 -AAGGGTCCTTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAG 47192005 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | || ||||| || ||| ||||| | | |||||||| | | |||| Sbjct 47192006 GGATGCCCTCTTTGTCTTGGATCTTCGCCTTGACATTATCAATGGTATCTGAACTCTCCA 47192065 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||||||||| || || | ||| || |||||||||||||| Sbjct 47192066 CCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 47192114 >seq5 Length=37180910 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| || || | || ||||||| |||||| Sbjct 32956883 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 32956824 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| || | | ||||||||| || || Sbjct 32956823 TTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGGATCTTG 32956764 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||||| ||| | || ||||| || || || Sbjct 32956763 GCCTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTA 32956704 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| |||||||| Sbjct 32956703 AGGGTCTTGACAAATATCTGCAT 32956681 >seq11 Length=19732206 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||||||| || | |||||||| ||||| ||| || | Sbjct 461799 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCCTCCAGTTGCTTTCCGGCGAA 461858 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || ||||||||||| ||| || | | ||| |||||| |||||| ||| | | Sbjct 461859 GATCAAACGCTGCTGGTCCGGTGGAATCCCTTCTTTGTCCTGAATTTTGGACTTTACGTT 461918 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| | |||| ||| | |||||||| ||||| || | || || Sbjct 461919 GTCG--ATGGTGTCGGAACTCTCCACCTCAAGAGTTATGGTCTTACCAGTCAAGGTCTTA 461976 Query 48713 ACAAAAATCTGCATC 48727 || || || |||||| Sbjct 461977 ACGAAGATTTGCATC 461991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| ||| || || |||||||| || || | | || || ||||||| || || Sbjct 11449192 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGCGAGAGTGCGGC-CGTCCTCGAGTTG 11449250 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||||||| || | | ||||||||| || || Sbjct 11449251 CTTTCCGGCGAAGATGAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGTATCTT 11449310 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | ||||| || | ||||||| ||| | || ||||| || || || Sbjct 11449311 GGTCTTGACGTTATCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGT 11449370 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| || || || |||||| Sbjct 11449371 AAGAGTTTTTACGAATATTTGCATC 11449395 >seq4 Length=20812224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| ||| || || ||||||||||| || | || ||||||| |||||| Sbjct 18691254 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGCGAGGGTGCGACCGTCCTCGAGCTGC 18691195 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | |||||||||||| || | | ||||||||| ||| || Sbjct 18691194 TTTCCTGCAAAGATGAGACGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAATCTTG 18691135 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | ||||||| ||| | || ||||| || || || Sbjct 18691134 GCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCCGTA 18691075 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || ||||||||||| || ||||| Sbjct 18691074 AGGGTTTTCACAAATATTTGCAT 18691052 >seq591 Length=869021 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | | ||| || || || || |||||||||||| ||||||||||| Sbjct 243412 ACCACCTCTCAAACGAAGCACCAAGTGGAGGGTTGACTCCTTTTGAATATTGTAATCAGC 243471 Query 48559 CAATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||| || || ||||| | |||| | | ||| |||||| | Sbjct 243472 -AAGGGTCCTTCCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTCTGTTGATCCGGAG 243530 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | || ||||| || || ||||| | | |||||||| | | |||| Sbjct 243531 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCAATGGTATCTGAACTCTCCA 243590 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||||||||| || || | ||| || |||||||||||||| Sbjct 243591 CCTCCAAGGTTATGGTTTTTCCAGTCAAAGTCTTTACAAAAATCTGCAT 243639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421238370136499