Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq425 118 6e-22 seq10 114 7e-21 seq11 111 8e-20 seq8 111 8e-20 seq592 107 1e-18 seq6 107 1e-18 seq2 107 1e-18 seq594 105 3e-18 seq7 105 3e-18 seq5 105 3e-18 seq3 104 1e-17 seq593 102 4e-17 seq447 100 1e-16 seq1 95.1 6e-15 >seq425 Length=725354 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||||||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 427566 AAAATAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 427507 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 427506 TCTAACCAACTGAGCTAATAGGCC 427483 Score = 105 bits (116), Expect = 3e-18 Identities = 83/98 (85%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 11433 ATAGAATTA-ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||||| || || |||| ||| ||||||||| | | |||||||| |||||||||||| Sbjct 407469 ATAGAAATATATTCAAAA--AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGT 407412 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||| |||||||||| |||| Sbjct 407411 TATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 407374 >seq10 Length=20996616 Score = 114 bits (126), Expect = 7e-21 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 ||||| ||||||||| | | ||||||||| ||||||||||||||||||||||||||||| Sbjct 17522397 TCAAAATGGCCCATGCAGGTATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTA 17522456 Query 11510 ACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| Sbjct 17522457 ACCAACTGAGCTAATAGGCC 17522476 >seq11 Length=19732206 Score = 111 bits (122), Expect = 8e-20 Identities = 80/93 (86%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCA----AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || |||||| || |||||||||||| | | |||||||| ||||||||||||||||| Sbjct 6543749 AAAAAAAAAACATTTGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 6543808 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 6543809 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 6543841 >seq8 Length=45727239 Score = 111 bits (122), Expect = 8e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| ||||||||| | | |||||| | ||||||||||||||||||||||||| Sbjct 34128763 AAAAATGAAAATGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCACGACG 34128822 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 34128823 CTCTAACCAACTGAGCTAATAGGCC 34128847 >seq592 Length=919490 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 241838 AAAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 241779 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 241778 CAACTGAGCTAATAGGCC 241761 >seq6 Length=37436759 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 7584577 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 7584518 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 7584517 CAACTGAGCTAATAGGCC 7584500 >seq2 Length=25360630 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 3508101 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3508160 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 3508161 CAACTGAGCTAATAGGCC 3508178 >seq594 Length=839672 Score = 105 bits (116), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 283437 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 283496 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 283497 CCAACTGAGCTAATAGGCC 283515 >seq7 Length=55601358 Score = 105 bits (116), Expect = 3e-18 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 11449 ATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTC 11507 || |||| ||||||||| | | |||||||| |||||||||||||||||||||||||||| Sbjct 38512616 ATAAAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTC 38512557 Query 11508 TRACCAACTGAGCTAATGGGCC 11529 | ||||||||||||||| |||| Sbjct 38512556 TAACCAACTGAGCTAATAGGCC 38512535 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 2517396 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 2517455 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2517456 TGAGCTAATAGGCC 2517469 >seq5 Length=37180910 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| || ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 31844764 AATAAACAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 31844707 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 31844706 GACGCTCTAACCAGCTGAGCTAATAGGCC 31844678 >seq3 Length=12950713 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5116157 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5116098 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5116097 TGAGCTAATAGGCC 5116084 >seq593 Length=899142 Score = 102 bits (112), Expect = 4e-17 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| ||||| |||||||| | | |||||||| ||||||| ||||||||||||| | Sbjct 182779 AAAAAGAAAATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCA 182838 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 182839 CGCTCTAACCAACTGAGCTAATGGGCC 182865 >seq447 Length=412358 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 17389 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 17448 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 17449 TGAGCTAATAGGCC 17462 Score = 100 bits (110), Expect = 1e-16 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 57499 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 57558 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||| |||||||||| |||| Sbjct 57559 CCAGCTGAGCTAATAGGCC 57577 >seq1 Length=36501346 Score = 95.1 bits (104), Expect = 6e-15 Identities = 76/91 (84%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 11444 AAAAAAT-CAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||| |||| ||||||||| | | |||||||| ||||||| ||||||||||| Sbjct 34972933 AAAAAATGCAAAATTCTTGGCCCATACAGGTCTCGAACCTGCGACCTTGGCGTTATTAGC 34972874 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||| ||||||||||||||| |||| Sbjct 34972873 ACCACGCTCTAACCAACTGAGCTAATAGGCC 34972843 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261483235876924