Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7 158 2e-34 seq3 125 1e-24 seq2 122 1e-23 >seq7 Length=55601358 Score = 158 bits (174), Expect = 2e-34 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || |||||||||||||| || ||||| ||||| ||| | |||||||| || Sbjct 45126444 GATAACATTCAGGGAATCACCAAGCCCGCGATCCGCCGTCTCGCTAGACGTGGTGGCGTT 45126385 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| || ||| | |||| ||||| | ||||| |||| | |||||||| ||| || Sbjct 45126384 AAACGTATCAGTGGTCTCATCTACGAAGAAACTCGTGGTGTTCTCAAGATCTTTCTCGAG 45126325 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | |||||||| || ||| || || |||||||||||| || ||||| |||||| || Sbjct 45126324 AACGTTATCCGCGACGCTGTCACGTACACCGAGCACGCTCGCCGCAAGACCGTCACCGCC 45126265 Query 16640 ATGGATATCGTCTATGC 16656 |||||| | ||||| || Sbjct 45126264 ATGGATGTTGTCTACGC 45126248 >seq3 Length=12950713 Score = 125 bits (138), Expect = 1e-24 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||| || ||||| || || || ||||| || ||| ||||||| | || Sbjct 4037566 TCTTCGTGATAACATTCAGGGAATTACTAAACCTGCTATTCGCCGTTTGGCTCGCAGAGG 4037625 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||| | |||| || || | |||| ||| | |||||||| Sbjct 4037626 TGGTGTGAAGAGAATCAGTGGTCTCATCTACGAGGAAACCCGTGGTGTCCTTAAGATCTT 4037685 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| ||||| | ||||||| | ||| || ||||| || | | |||||||| Sbjct 4037686 TCTTGAGAATGTTATTCGTGATGCTGTTACCTACACTGAGCATGCCAGGAGGAAGACTGT 4037745 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | || |||||| | || | |||||| | | | ||||||||||| Sbjct 4037746 TACTGCCATGGACGTTGTTTATGCACTTAAGAGACAAGGCAGAACTCTCTATGGTTTTGG 4037805 Query 16693 AAGTTAATCTTC 16704 |||||| ||| Sbjct 4037806 TGGTTAATTTTC 4037817 >seq2 Length=25360630 Score = 122 bits (134), Expect = 1e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||| || ||||| || ||||| || || || ||| |||||||| | ||||| Sbjct 5294129 CGTGACAACATTCAGGGAATAACGAAGCCTGCCATTCGGCGTTTGGCTCGTAGGGGTGGT 5294070 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| | ||| | |||||||||||| ||| | |||| |||||||||| || Sbjct 5294069 GTCAAGCGTATAAGTGGTCTTATCTATGAAGAGACTCGCGGTGTTCTGAAGATCTTTCTT 5294010 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | ||| || | || ||||||||||| | | | ||||| || || Sbjct 5294009 GAGAACGTGATTCGTGACGCAGTTACGTACACCGAGCACGCCAGAAGAAAGACGGTTACG 5293950 Query 16637 TCCATGGATATCGTCTATGC 16656 | |||||| | || ||||| Sbjct 5293949 GCAATGGATGTGGTTTATGC 5293930 Score = 102 bits (112), Expect = 1e-17 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||| || || || || || || || || || || ||||| | | || Sbjct 18701209 TCTTCGGGACAACATTCAGGGCATAACGAAACCGGCGATTCGGCGATTGGCTAGAAGAGG 18701150 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || ||| | || ||||||| |||||||||||| | | || ||||||| || Sbjct 18701149 TGGCGTGAAGAGGATCAGTGGATTGATCTATGAAGAGACCAGAGGAGTGCTGAAGATATT 18701090 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || || | || ||| | ||||||||||||||||| | |||||||| Sbjct 18701089 TTTGGAGAATGTGATTCGCGACGCTGTGACCTATACCGAGCACGCTAGGAGGAAGACTGT 18701030 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | || ||||| |||| | || || | | | ||||||||||| Sbjct 18701029 TACGGCCATGGACGTTGTGTATGCGCTGAAGAGACAGGGAAGGACTCTCTATGGTTTTGG 18700970 Query 16693 A 16693 | Sbjct 18700969 A 18700969 Score = 84.2 bits (92), Expect = 3e-12 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||| || || || || || || || || || || |||| | | ||| Sbjct 16146324 CTTCGCGATAACATTCAGGGCATAACGAAACCGGCAATTCGGCGATTGGCGAGAAGAGGT 16146383 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || ||||||| | ||||| |||| | | || ||||||| ||| Sbjct 16146384 GGTGTGAAGAGAATCAGTGGATTGATTTATGAGGAGACGAGGGGAGTGCTGAAGATTTTC 16146443 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | |||||| | || || ||||| |||| | ||||| || Sbjct 16146444 TTGGAGAACGTAATTCGCGATGCTGTGACATACACGGAGCATGCTAGGAGGAAGACGGTT 16146503 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | || ||||| |||| | || || | | ||||||||||||| Sbjct 16146504 ACGGCCATGGACGTGGTGTATGCCCTGAAGAGACAGGGAAGAACCCTTTATGGTTTTGG 16146562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072915146807