Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq2499 601 1e-167 seq210 471 1e-128 seq1 248 3e-61 seq831 145 2e-30 >seq2499 Length=151271 Score = 601 bits (666), Expect = 1e-167 Identities = 730/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| || || ||||| | || |||||||| || | Sbjct 4284 TTCTGTAATTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 4225 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||||||| ||| | |||| ||| || ||||| |||| |||||||| || || Sbjct 4224 ATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGCTTTTATCGCTGCCCCT 4165 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || |||||||| ||||| || || || | || ||||||||| Sbjct 4164 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAAT 4105 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || |||||||| || | |||| | || || ||||| |||| ||||||||||| Sbjct 4104 ATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTATCCGATA 4045 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | ||||| |||||||||||||||||||| ||| |||| |||| Sbjct 4044 TGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTT 3985 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | || ||||| ||| ||| | |||||||||| || | Sbjct 3984 CTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGT 3925 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| | || ||||| || |||||| |||| || | |||| ||| |||| Sbjct 3924 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCT 3865 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | || || |||| ||||| || ||| |||||||||||||| || || Sbjct 3864 GT-TTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTAGGAAT 3806 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||||||||||| || |||||| | ||||| || || || || ||||| ||||||||||| Sbjct 3805 TTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCC 3746 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | ||||| ||||| |||||||| || || || || ||||||||| || Sbjct 3745 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 3686 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||||| ||||| | |||| |||||| || || ||| ||| || | || Sbjct 3685 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGG 3626 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || | || || ||||| ||||| || ||||||||||| ||||| || || || ||||| Sbjct 3625 TTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGG 3566 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 ||||||| || |||||||| |||||| ||||||||||||||||||||||| || || Sbjct 3565 CCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGC 3506 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 | ||| || || || || || ||| ||||| | | || ||| |||||||||||||||| Sbjct 3505 TGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAA 3446 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 | | ||||||||||| || ||||| || ||||||||| ||||| || |||| | Sbjct 3445 CTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAA-GGTCGTGTAATAAATA 3387 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | || |||||||||| || | ||||| ||||| || || |||| Sbjct 3386 CCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATG 3327 Query 20248 CTCATAACTTCCCACTTGATTTAGCTTCG 20276 ||||||| ||||| || ||| ||||| || Sbjct 3326 CTCATAATTTCCCTCTAGATCTAGCTGCG 3298 >seq210 Length=134088 Score = 471 bits (522), Expect = 1e-128 Identities = 588/801 (73%), Gaps = 4/801 (0%) Strand=Plus/Plus Query 19459 ACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACT 19518 || |||||||||| |||||||| || | |||| | || | || ||||| |||| | Sbjct 12999 ACAGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATT 13058 Query 19519 TTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATC 19578 |||||||||| |||||||| | || | ||||| |||||||||||||||||||| ||| Sbjct 13059 TTTATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATG 13118 Query 19579 AACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAAC 19638 |||| |||| | ||||||||| | || ||||| ||| ||| | ||||||||| Sbjct 13119 AACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAAC 13178 Query 19639 TATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAG 19698 | || | | || ||| | || ||||| || |||||| |||| || | ||| Sbjct 13179 TTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAG 13238 Query 19699 CAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATG 19757 | ||| |||||| ||||| | | || || |||| ||||| || ||| ||||||||| Sbjct 13239 CCGCTACTGCTGT-TTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATG 13297 Query 19758 CCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATC 19817 ||||| || || ||||||||||| || |||||| | ||||| || || || || ||||| Sbjct 13298 CCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATT 13357 Query 19818 CTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCT 19877 |||||||||| || |||||| | ||||| |||| |||||||| || || || | | Sbjct 13358 CTTATGCATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGT 13417 Query 19878 GCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCG 19937 |||||||| || ||||| ||||| | |||| |||||| || || ||| ||| Sbjct 13418 GCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCC 13477 Query 19938 CAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACAC 19997 || | || || | || || ||||| ||||| || ||||||||||| ||||| || Sbjct 13478 GCTAATGAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCAT 13537 Query 19998 GGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACAT 20057 || || ||||| ||||||| || |||||||| |||||| ||||||| |||||||||| Sbjct 13538 GGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACAT 13597 Query 20058 TTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACT 20117 ||||| || ||| ||| || || || || || ||| ||| | | | || ||| ||||| Sbjct 13598 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCACT 13657 Query 20118 ATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAA 20176 |||||||||||| | ||||||||||| || ||||| || ||||||||| ||||| || Sbjct 13658 ATGGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAA-GGTCG 13716 Query 20177 GATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCA 20236 |||| || ||||||||| | | || |||||||||| || | ||||| ||||| Sbjct 13717 TGTAATAAATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCA 13776 Query 20237 CGAGCGCAATGCTCATAACTT 20257 || || ||||||||||| || Sbjct 13777 TGAACGTAATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 248 bits (274), Expect = 3e-61 Identities = 457/664 (69%), Gaps = 6/664 (1%) Strand=Plus/Plus Query 19413 GTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATT 19472 |||||||| ||||| || |||| ||| |||| | | || || ||||||||||| Sbjct 31713640 GTAGATATTGATGGTATTCGTGTGCCTGTTTTTAGATATCTACATTATGGAAACAATATC 31713699 Query 19473 ATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGG 19532 |||||||| | | || | | | | || ||||| |||| |||||| |||| | | Sbjct 31713700 ATTTCTGGTGTGATTATTTCTATTTTTACGGCTATAGGTTTGCATTTTTATTCGATATAG 31713759 Query 19533 GAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTC 19592 ||||| | || | ||||| ||||||||||| || ||| | | |||| |||| | Sbjct 31713760 GAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCACGAACTAATTGTTCTA 31713819 Query 19593 CACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTA 19652 | |||||| | || ||||| ||| ||| | |||||||||| || | || Sbjct 31713820 TATTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTTTCGTTTG 31713879 Query 19653 GGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTG 19712 || ||| | || | ||| | || |||||| || | || | | | | | ||| Sbjct 31713880 GGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCCTATTGTATTCGTTACTATTGT- 31713938 Query 19713 TTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTC 19771 ||||| | | || || |||| ||||| | ||| |||||||||||| | || || || Sbjct 31713939 TTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATGGTATGCCTTTAGGAATTTC 31713998 Query 19772 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 19831 ||||||||| || |||||| | ||||| || || || || ||||| |||||||||| || Sbjct 31713999 TGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATAT-TTTATGCATCCATT 31714057 Query 19832 CCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAG 19891 |||||| | ||||| ||||| | | | || || || || ||| || |||||| || Sbjct 31714058 TCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTATTCAGTGTTATGCATGGTTC 31714117 Query 19892 TTTGGTTACTTC--CTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGC 19949 ||||| ||||| | | |||| |||||| | || ||| ||| || | || Sbjct 31714118 CTTGGTAACTTCTAGTTTTTGATCAGGGAAACCATAGAAAATGAATCCGCTAATGAAGGT 31714177 Query 19950 TATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 20009 || | || | ||||| ||||| || ||||||||||| | || || || || ||| || Sbjct 31714178 TACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGTTGTTCATGGTTATTTTTGG 31714237 Query 20010 AGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCT 20069 ||||||| || |||| ||| ||| || ||||||| ||||||||||||||| || ||| Sbjct 31714238 CGATTGATCTTCCAATGTGCAAGTTTTAACAATTCTC-TTCTTTACATTTCTTCCTAGCT 31714296 Query 20070 ACTT 20073 |||| Sbjct 31714297 ACTT 31714300 >seq831 Length=321430 Score = 145 bits (160), Expect = 2e-30 Identities = 205/285 (72%), Gaps = 10/285 (4%) Strand=Plus/Plus Query 19324 TTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCT 19383 |||| | || |||||||| || | ||||||||| ||| | |||| ||| || | Sbjct 261841 TTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTCTGTAT 261900 Query 19384 TTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTT 19443 |||| |||| |||||||| || || || |||||||| ||||| || |||||||| |||| Sbjct 261901 TTATTATCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTT 261960 Query 19444 CCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCA-AT 19502 | || || || | || ||||||||||| |||| ||| ||| | ||| | || || Sbjct 261961 CTGGATCTCTACTTTATGGAAACAATATCATTTGTGGTGCAAATGGTCC---TTACATAT 262017 Query 19503 G---CAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGA---GTGG 19556 | | ||||| |||| |||||| | ||||||||| | | || | ||||| |||| Sbjct 262018 GTGACTATAGGTGTGCATTTTTATACAATCTGGGAAACAGCTTCTGTTGATGAATGGTGG 262077 Query 19557 TTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTA 19601 |||| ||| | ||||| ||| |||| |||| | ||||||||| Sbjct 262078 TTATTGAACAGTGGTCCTTATGAACTAATTGTTCTACACTTCTTA 262122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144437313605244