Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq2499 466 3e-126 seq210 383 3e-101 seq1 178 2e-39 seq2390 132 8e-26 seq831 98.7 2e-15 >seq2499 Length=151271 Score = 466 bits (516), Expect = 3e-126 Identities = 669/943 (71%), Gaps = 0/943 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | ||||| || | | | ||||||| | ||||| Sbjct 4244 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTA 4185 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || || ||||| || ||||| || ||||| || || || ||||| || || |||| | Sbjct 4184 TCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGAT 4125 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | ||||| ||||| ||||| |||||||| || |||| |||| || || | Sbjct 4124 CTCTACTTTATGGAAACAATATCATTTCTGGTGCGATTATTCCTACTTCTGCGGCTATAG 4065 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| || || ||||| || ||||||||||| || ||||||| ||| | ||||| || | Sbjct 4064 GTTTGCATTTTTATCCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCG 4005 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| | | | | | |||||| | | || | | |||||||| | Sbjct 4004 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTG 3945 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | ||| | ||||||||||||||||| |||||| |||||||| | Sbjct 3944 AGTGGGAACTTAGTTTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 3885 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 |||| |||| ||| ||||| ||| | | || || | ||||| || || || | Sbjct 3884 CTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGG 3825 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | ||||||||| |||| || || || || ||||| || ||| | ||||| || || || | Sbjct 3824 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGC 3765 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCAT 212149 |||| || |||||||| ||||| || ||| |||||| || ||| | ||||| || | Sbjct 3764 ATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCC 3705 Query 212150 TATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTT 212209 |||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 3704 TATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 3645 Query 212210 TAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTG 212269 || || || | ||||||| || || ||||| ||||| || ||||| || || | Sbjct 3644 ATGAATCCGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTAG 3585 Query 212270 CTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAA 212329 |||| ||||| || || || || | |||||||| |||||| |||||||| | Sbjct 3584 CTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTT 3525 Query 212330 GTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTA 212389 |||||| |||||||| || | |||||||| | || | ||||| ||| || | |||| Sbjct 3524 CTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTA 3465 Query 212390 TCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCAT 212449 || |||| ||||| |||||| ||||||| || || ||||||||||| || |||||| Sbjct 3464 TCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTC 3405 Query 212450 CAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 212509 |||| || | ||| |||| |||| || ||||| |||| |||||||||||||||| Sbjct 3404 AAGGTCGTGTAATAAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAG 3345 Query 212510 TTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 | ||||| ||| | ||||| || || ||||| || || |||| Sbjct 3344 TAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 3302 >seq210 Length=134088 Score = 383 bits (424), Expect = 3e-101 Identities = 561/794 (71%), Gaps = 0/794 (0%) Strand=Plus/Plus Query 211744 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTAT 211803 ||||| ||||| |||||||| || |||| |||| | || || ||||| || || ||| Sbjct 13004 AACAATATCATTTCTGGTGCGATTATTCCTACTTCTATAGCTATAGGTTTGCATTTTTAT 13063 Query 211804 CCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTG 211863 || || ||||||||||| || ||||||| ||| | ||||| || |||||||| | | Sbjct 13064 CCGATATGGGAAGCAGCTTCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTA 13123 Query 211864 GTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCA 211923 | | | |||||| | | || | | |||||||| | ||||||||||| Sbjct 13124 ATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGT 13183 Query 211924 TACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCT 211983 | ||| | ||||||||||||||||| |||||| |||||||| ||| | |||| ||| Sbjct 13184 TTTCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTATTGCAGCCGCT 13243 Query 211984 TTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTA 212043 ||||| ||| | | || || | ||||| || || || || ||||||||| || Sbjct 13244 ACTGCTGTTTTCTTGATCTATCCTATTGGTCAAGGAAGCTTTTCGGATGGTATGCCTCTA 13303 Query 212044 GGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATG 212103 || || || || || ||||| || ||| | ||||| || || || ||||| || |||||| Sbjct 13304 GGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATG 13363 Query 212104 CACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATG 212163 || | ||| || ||| |||||| | ||| | ||||| || | ||| ||||||| Sbjct 13364 CATCTATTTCACATGTTAGGTGTAACTGGTGTATTCGGCGGCTCCCTATATAGTGCTATG 13423 Query 212164 CACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAAC 212223 || ||||| | || || ||| | ||| | |||||||| | || || || Sbjct 13424 CATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAAT 13483 Query 212224 TATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATAC 212283 | || |||| || || ||||| ||||| || ||||| || || ||||| ||||| || Sbjct 13484 GAAGGNTACAGATTTGGNCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTAT 13543 Query 212284 TTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTC 212343 || || || | |||||||| |||||| |||||||| |||||| |||||| Sbjct 13544 TTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCATTCTTTACATTTCTTC 13603 Query 212344 CTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCA 212403 || || | |||||||| | || | ||||| | | || | |||||| |||| ||||| Sbjct 13604 CTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATCGCTTTAGGTATCAGCACTATGGCT 13663 Query 212404 TTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTT 212463 |||||| ||||||| || || ||||||||||| || |||||| |||| || | Sbjct 13664 TTCAACTTAAATGGTTTTAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATA 13723 Query 212464 CCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGA 212523 |||||||| |||| || ||||| |||| ||||||||||||||||| ||||| ||| | Sbjct 13724 AATACTTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGT 13783 Query 212524 AATGCACACAACTT 212537 ||||| || || || Sbjct 13784 AATGCTCATAATTT 13797 >seq1 Length=36501346 Score = 178 bits (196), Expect = 2e-39 Identities = 421/628 (67%), Gaps = 14/628 (2%) Strand=Plus/Plus Query 211738 TATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACAC 211797 ||||| ||||| ||||| ||||||| || || | || | || || ||||| || Sbjct 31713685 TATGGAAACAATATCATTTCTGGTGTGATTATTTCTATTTTTACGGCTATAGGTTTGCAT 31713744 Query 211798 TTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTAC 211857 || ||| | || | |||||||| || ||||||| ||| | |||||||||||| || || Sbjct 31713745 TTTTATTCGATATAGGAAGCAGTTTCTATTGATGAATGGTTATACAATGGTGGTTCTCAC 31713804 Query 211858 CAGTTGGTAATCTTCCAC-TTCCTTA-TCGGAATCTCAGCATACATGGGAAGACAGTGGG 211915 | | | | ||| | || |||| | || | | |||||||| | |||||| Sbjct 31713805 GAACTAAT--TGTTCTATATTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGG 31713862 Query 211916 AACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACC---TG 211972 ||||| | ||||| ||||||||||||| ||| |||||| |||||| | || || Sbjct 31713863 AACTTAGTTTTCGTTTGGGTATGCGTCCTTTGATTGTTGTTGCATATTCAACTCCTATTG 31713922 Query 211973 TATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACG 212032 ||| | || | ||| ||| | | || || | ||||| || || | ||| | Sbjct 31713923 TATTCGTTACTAT---TGTTTTCTTGATCTATCCTATTGGTCAAGGAAACTTTTTAGATG 31713979 Query 212033 GTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATA 212092 ||||||||||||| || || || || ||||| || ||| | ||||| || || || |||| Sbjct 31713980 GTATGCCTTTAGGAATTTCTGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATA 31714039 Query 212093 ACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTAT 212152 | || ||||||| ||||| || ||| |||||| || ||| | || || | ||| Sbjct 31714040 ATAT-TTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGAAATTGGCGGCTCCCTAT 31714098 Query 212153 TCTCTGCTATGCACGGTTCTCTTGTTACATCT--TCACTTATCCGTGAAACCACTGGTTT 212210 || || |||||| ||||| | || || ||| | | ||| | ||||||| | Sbjct 31714099 TCAGTGTTATGCATGGTTCCTTGGTAACTTCTAGTTTTTGATCAGGGAAACCATAGAAAA 31714158 Query 212211 AGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGC 212270 || || || | ||||||| || | ||||| ||||| || ||||| || || | Sbjct 31714159 TGAATCCGCTAATGAAGGTTACAGATTTGNTCAAGAGGAAGAAACTTATAATATTGTAGT 31714218 Query 212271 TGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAG 212330 || ||||| || || | || | |||||||| | |||| || ||||| | Sbjct 31714219 TGTTCATGGTTATTTTTGGCGATTGATCTTCCAATGTGCAAGTTTTAACAA-TTCTCTTC 31714277 Query 212331 TTTACACTTCTTCCTCGCATCATGGCCT 212358 |||||| |||||||| || | |||||| Sbjct 31714278 TTTACATTTCTTCCTAGCTACTTGGCCT 31714305 >seq2390 Length=165625 Score = 132 bits (146), Expect = 8e-26 Identities = 248/360 (69%), Gaps = 6/360 (2%) Strand=Plus/Plus Query 194583 GAAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTAC 194642 ||||||||| | ||| || | ||||| || || || ||||| || || ||| || Sbjct 78157 GAAACCTGAATTTGTTATTGTAGCTGCAGCCAAAGTTGGTGGCATCCATGCCAACAACAC 78216 Query 194643 CTATCCTGCCGATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCT 194700 ||| ||||| |||||||| | || ||| || || ||||| ||||| || ||| || Sbjct 78217 CTACCCTGCTGATTTCATTGCCAT--CAACCTCCAAATCCAGACCAATGTCATCGATTCT 78274 Query 194701 GCATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAG 194760 || ||||| ||||| ||||||||||||||| | ||||| |||||||| || || || Sbjct 78275 GCTTATCGCAATGGTACCAAGAAACTATTGTTTTTGGGTTCCTCTTGCATTTACCCCAAA 78334 Query 194761 TTTCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAAT 194820 ||| | ||| ||| |||| ||| |||||| || | || ||||| | ||| Sbjct 78335 TTTGCTCCCCAACCGATTCCAGAAGATGCTTTACTTACTGGACCATTGGAGCCTACAAAT 78394 Query 194821 -AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGCA 194879 | || ||||| ||||| ||||| || || || | ||||| || || || | || Sbjct 78395 GAATG-GTATGCCATTGCCAAGATTGCTGGGATCAAAATGTGCCAGGCTTACAGAATTCA 78453 Query 194880 GTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAATTT 194939 |||| | ||||||| || |||||| || || | || ||||| | |||||||| Sbjct 78454 GTATAAGTGGGATGCAATTTCGGGAATGCCCACCAACTTGTATGGACCATACGATAATTT 78513 >seq831 Length=321430 Score = 98.7 bits (108), Expect = 2e-15 Identities = 175/253 (69%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | ||||| || | | | ||||||| | ||||| Sbjct 261847 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACTGCAACTTCTGTATTTATTA 261906 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || || ||||| || ||||| || ||||| || || || ||||| || || |||| | Sbjct 261907 TCGCTTTTATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGAT 261966 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACG---CAA 211786 | | | ||||| ||||| ||||| | ||||||| || ||| | || | | | | Sbjct 261967 CTCTACTTTATGGAAACAATATCATTTGTGGTGCAAATGGTCC--TTACATATGTGACTA 262024 Query 211787 TCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA---GTGGCTCTACA 211843 | ||| | || || ||| | ||||||||| |||| || ||||||| |||| | | | Sbjct 262025 TAGGTGTGCATTTTTATACAATCTGGGAAACAGCTTCTGTTGATGAATGGTGGTTATTGA 262084 Query 211844 ATGGTGGTCCTTA 211856 | |||||||||| Sbjct 262085 ACAGTGGTCCTTA 262097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807529973994440