Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1493 174 2e-38 seq3 143 3e-29 seq1 95.1 2e-14 >seq1493 Length=4971659 Score = 174 bits (192), Expect = 2e-38 Identities = 394/582 (68%), Gaps = 14/582 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| ||||||||||||| || ||||||||||| || |||||| Sbjct 4757565 CAAGCGAAGTCGCAGTGGAGACCCTCGTCTCGGGAGATGAGTTCGTTGGAGAAAGTGAGT 4757506 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCAGAAAAGAA 33422 || ||||| ||||| || || || |||||||| ||||| || || | | || || ||||| Sbjct 4757505 CCTGGCATGAGGCCCCGTTTCTTGAGCCAAAAGATGGA-GCAAAAGCTTCCGGAGAAGAA 4757447 Query 33423 GATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCGCTGTCAT 33478 |||||| || || ||| || ||||| | || | ||| | | || ||| | ||| Sbjct 4757446 GATTCCCTCGAC-GCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGACTCGGAGGAGTC-- 4757390 Query 33479 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| | ||||| | ||||||||| | || || || || || || ||||| | Sbjct 4757389 -GATCCAGCGGAGGGCCCAGTTGGCCTTCTTGGTGACGCAGGGAATGGTGTCAATGGCGT 4757331 Query 33539 TAAAGAGATAGtttttttCATTAC--TATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 ||||||| | |||| || ||| ||||| | || || |||| | || || || Sbjct 4757330 GAAAGAGACGGCTTTTCTC--TACGGAGTCTTTTATGTAGGTTTCGAGGAGGAGGCTGTA 4757273 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||| || || |||||||| || || || ||||| || ||||| || | |||||||| Sbjct 4757272 CATCTCGGAGTGAATGTTCTCTATAGCGATCTGGAAGCCGTAAAAGGCGCGAGCCTCGGA 4757213 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | ||| || || | ||| || | || | |||||| || || ||||| ||| Sbjct 4757212 GACCTGGACCTCCTTCATAAAACGGCCGGCAAGATTTTCGAGTACGATGCCGTCGGAGGC 4757153 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 || || || || | ||||| | | |||| ||| | || || | ||||| Sbjct 4757152 AGCGAAGAAGGCAAGGACATGGGTGACGAAATGGCGCTCGCCGTCGGTAAGAGTGTTCCA 4757093 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | | |||| || | || | || || || ||| | ||||| || || || ||||| || Sbjct 4757092 GTGACTGATGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCTTCTGCTTT 4757033 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || ||||| | |||||| | ||||| || ||||| || Sbjct 4757032 CTTGTACATTTCCCAGATTTGGGGGTATTGAATAGGGAACAT 4756991 >seq3 Length=12950713 Score = 143 bits (158), Expect = 3e-29 Identities = 245/353 (69%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || || || |||| || ||||||||||| || ||||| Sbjct 6095749 CACGCGAAGTCGCAGTGGAGCCCTTCATCTCGCGATATGAGTTCGTTGGAGAAGGTGAGA 6095690 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| | ||||||||| || ||||||||||| || ||| || || |||||| Sbjct 6095689 CCGGGCATCAAGCCACGCTTCTTGAGCCAAAATATCGAGCAGAAGCTGCCGGAGAAGAAG 6095630 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33482 ||||| || || ||| || ||||| | || | ||| | | | || || ||| || Sbjct 6095629 ATTCCCTCGAC-GCAGGCGAAGGCGACGAGGCGCTCGGCGAAGGAGTCGGTGGCATCGAT 6095571 Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 ||| ||||| | ||||||||| ||||| || || || || | ||| || Sbjct 6095570 CCAGCGCAAGGCCCATTGGGCCTTCTTGGCGACACAGGGGATGGTATCGACGGCGCGGAA 6095511 Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33602 |||| || ||||| | ||||| | || || || | | ||||| ||||| || Sbjct 6095510 CAGATGATTCTTTTCGGTGGAGTCTTTGATGTAGGTTTCCAAGAGGAGACTGTACATCTC 6095451 Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 || || ||||| || ||||| ||||| || ||||||||| | |||||||| Sbjct 6095450 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAAGCACGAGCCTCGG 6095398 >seq1 Length=36501346 Score = 95.1 bits (104), Expect = 2e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||| | || | ||| || | ||| | || | || |||||||| |||||| Sbjct 21164179 TCCCCCTTGATCCACATAACGAGCAGTATCATTGAACACACGCAGCATTGGAAGAATACC 21164238 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 |||||| | ||||| || || ||| || || || ||||||||||||| || || Sbjct 21164239 ATTTGATGTCCCATTTGTGCCACGGATGTAACTGCCTGTGGCACGAATATTGTGAACAGA 21164298 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTGTCATAGA 63549 | ||| ||||| || || ||| | | |||| || || || || |||||||| | Sbjct 21164299 AACACCAATTCCACCAGCTGATTT-GCTAATAATAGCACACTCCTTCAAAGTGTCATATA 21164357 Query 63550 TACCCTCTATGCTATCATCGATCATG 63575 | |||||||| |||||||| ||||| Sbjct 21164358 TTCCCTCTATACTATCATCTTTCATG 21164383 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 |||||||||||||| | || ||||| || || || ||||| || ||| | || | | Sbjct 21164537 GTTCCCGCATTAAAAAGAGTTGGAGATGCATGAGTGAACCACCGTTGAGACATAAGGTGG 21164596 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || | | ||| || || || || | ||||||||| || || || | ||| ||| Sbjct 21164597 TATGTTTTGACAGCAGAATCGATGTCTTCCTTATGAATTCCAACAGCAACCCTCATCAAC 21164656 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||| || |||||||| || | ||| | | || || | |||||| | || | Sbjct 21164657 ATGTGTTGTGGTCTTTCCACCACCTTACCTTGAACCTTTAAGAGGTAGGACCTCTCAAGG 21164716 Query 63792 GTTTTAAAACCAAAATA 63808 ||||| ||||||||||| Sbjct 21164717 GTTTTGAAACCAAAATA 21164733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622927740686840