Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 114 3e-20 seq5 104 6e-17 >seq1 Length=36501346 Score = 114 bits (126), Expect = 3e-20 Identities = 170/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || ||| || ||||| || | |||||| | ||| | Sbjct 21164398 TTGCTTCCTTGTGTGCATGAAAGATGATAGTATAGAGGGAATATATGACACTTTGAAGGA 21164339 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG- 363724 |||||| ||||| ||| || || ||||||||||| || | |||||| |||||| Sbjct 21164338 GTGTGCTATTATTAGCAAATCAGCTGGTGGAATTGGTGTTTCTGTTCACAATATTCGTGC 21164279 Query 363725 CACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 ||||| ||||||||| || ||||| | |||| | || ||||| | |||| ||||| Sbjct 21164278 CACAG-GCAGTTACATCCGTGGCACAAATGGGACA-TCAAATGGTATTCTTCCAATGCTG 21164221 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||||||| | ||||||| | || || || || || ||||| ||| | ||||| Sbjct 21164220 CGTGTGTTCAATGATACTGCTCGTTATGTGGATCAAGGGGGAGGCAAGAGGAAAGG 21164165 >seq5 Length=37180910 Score = 104 bits (114), Expect = 6e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 111702 CAGTTTTATGTA-CACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| ||| |||| | | ||||| ||||||||||||||||||||||| || Sbjct 23872950 CAGTTTTATGTAGCACATGGGGA-GTTATCATGTCAAATGTATCAGCGATCTGCTGACAT 23872892 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || || ||||| |||||||||||| ||| || ||||| || ||| | || |||| Sbjct 23872891 GGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTACTGACATGCATGATTTCTCA 23872832 Query 111821 TTTT 111824 | || Sbjct 23872831 TGTT 23872828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303311868654218