Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vigna_20radiata_20var._20radiata_20[refseq_20GCF_5F000741045.1_20201 5-10-28] 2,499 sequences; 463,637,892 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq591 98.7 9e-16 seq5 89.7 4e-13 >seq7 Length=55601358 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || |||||| | || ||| |||| || || || | Sbjct 47180287 ATGCAAATCTTCGTGAAAACTTTGACCGGAAAAACTATCACCCTCGAGGTGGAATCCTCC 47180228 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| ||||| ||||||||||| || ||||| ||||| Sbjct 47180227 GATACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCCGGATCAG 47180168 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| || || || ||||| || || | |||| | | ||||| ||| Sbjct 47180167 CAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGACGGTAGAACCCTTGCTGATTACAAC 47180108 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 47180107 ATTCAGAAGGAGTCCAC 47180091 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || || ||||||||| | || ||| | || || ||| Sbjct 47192114 ATGCAGATTTTTGTAAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 47192055 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| ||||| |||||||| ||||| ||||| |||||| Sbjct 47192054 GATACCATTGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGCATCCCTCCGGATCAA 47191995 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || || ||||| || |||| || | | | ||||| || Sbjct 47191994 CAGAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGAAGGACCCTTGCTGATTACAAT 47191935 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || |||| || ||| | | |||||||| || Sbjct 47191934 ATTCAGAAGGAGTCAACCCTTCACTTGGTGCTTCGTTTGAGAGGTGG 47191888 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | || || ||| | |||||| | || || || | Sbjct 47191431 AATGCAGATATTTGTGAAGACTCTGACAGGGAAAACAATTACCTTGGAGGTGGAAAGCTC 47191372 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || || ||||||| ||||| || |||||||| || ||||| Sbjct 47191371 TGATACAATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATACCACCAGATCA 47191312 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||| || |||| | ||| |||||| | ||||||| | | | | || || || Sbjct 47191311 ACAGAGGCTTATTTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACAA 47191252 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||||| || ||||| Sbjct 47191251 CATTCAAAAAGAATCCACCCTTCAT 47191227 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||||||| | || ||| | || || ||| Sbjct 17086950 ATGCAGATTTTTGTGAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 17087009 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| || || |||||||| ||||| ||||| |||||| Sbjct 17087010 GATACCATTGATAATGTCAAGGCCAAAATCCAAGACAAAGAGGGCATCCCTCCGGATCAA 17087069 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || || || || || |||| |||| | | |||||| || Sbjct 17087070 CAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTTGCCGATTACAAT 17087129 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || | || || ||| | | |||||||| || Sbjct 17087130 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTTTGAGAGGTGG 17087176 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| || || || ||||| | ||||| | ||||| || | Sbjct 47184186 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 47184127 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | ||||| |||||| |||||||| || || || || || || Sbjct 47184126 TGATACCATTGATAATGTCAAGNCAAAGATCCAGGACAAAGAGGGNATTCCACCAGACCA 47184067 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || || || | | || ||||| || ||||||| ||| | | |||||||| Sbjct 47184066 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 47184007 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 ||| || || |||||||| | || || ||||| || Sbjct 47184006 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAG 47183971 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || |||||||| ||| | || || | || || || | Sbjct 47179604 AATGCAGATTTTTGTGAAGACTTTAACTGGGAAAACCATAACATTGGAGGTTGAAAGCTC 47179545 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || ||||||| ||||| |||||||| || || || || Sbjct 47179544 TGACACTATAGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCA 47179485 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||||| || | | || ||||| || ||||||| | | | | |||||||| Sbjct 47179484 GCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAA 47179425 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 |||||| || ||||| || | || || ||||| || Sbjct 47179424 CATTCAGAAGGAATCCACTCTGCACTTGGTGTTGAG 47179389 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| || || || ||||| | ||||| | ||||| || | Sbjct 48398808 AATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTC 48398749 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | ||||| |||||| |||||||| || || || || || || Sbjct 48398748 TGATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCACCAGACCA 48398689 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || || || | | || ||||| || ||||||| ||| | | |||||||| Sbjct 48398688 GCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAA 48398629 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 ||| || || |||||||| | || || ||||| || Sbjct 48398628 CATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAG 48398593 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || ||||| || ||| | || || | || || || | Sbjct 17087406 ATGCAGATTTTTGTGAAGACTTTAACGGGGAAAACCATAACTTTGGAGGTTGAAAGCTCT 17087465 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || ||||||| ||||| |||||||| || ||||| || Sbjct 17087466 GACACTATTGACAATGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCACCCGACCAG 17087525 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || ||||| || ||||||| | | | | ||||||||| Sbjct 17087526 CAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAAC 17087585 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 || || || ||||| || | || || ||||| || Sbjct 17087586 ATCCAGAAGGAATCCACTCTGCACTTGGTGTTGAG 17087620 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| ||| | || ||| | || || ||| Sbjct 47184413 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAAACCATAACCTTAGAGGTGGAGAGTTCA 47184354 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || ||| |||||| || || || || || ||||| || || Sbjct 47184353 GATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATCCCTCCAGACCAG 47184294 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||| || || || ||||||| |||| | | ||||| ||| Sbjct 47184293 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTACAAC 47184234 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 || || ||||||||||| | || || || || || Sbjct 47184233 ATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAG 47184199 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || || ||||| | || ||| | ||||| ||| Sbjct 47191886 ATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCA 47191827 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| ||||||| || || || || ||||| || |||||| Sbjct 47191826 GATACAATTGACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAA 47191767 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||| || || || ||||| | || | | | ||||||||| Sbjct 47191766 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAAC 47191707 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 || || |||||||| || | || || || || || Sbjct 47191706 ATACAGAAAGAATCCACTTTGCACTTGGTTTTGAG 47191672 >seq591 Length=869021 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || || ||||||||| | || ||| | || || ||| Sbjct 243639 ATGCAGATTTTTGTAAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCA 243580 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| ||||| |||||||| ||||| ||||| |||||| Sbjct 243579 GATACCATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCGGATCAA 243520 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || || ||||| || |||| || | | | ||||| || Sbjct 243519 CAGAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGAAGGACCCTTGCTGATTACAAT 243460 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| || || || | || || ||| | | |||||||| || Sbjct 243459 ATTCAAAAGGAGTCAACCCTCCACTTGGTGCTTCGTTTGAGAGGTGG 243413 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || |||||||| ||| | || || | || || || | Sbjct 243183 ATGCAGATTTTTGTGAAGACTTTAACTGGGAAAACCATAACTTTGGAGGTTGAAAGCTCT 243124 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || ||||||| ||||| |||||||| || || || || Sbjct 243123 GACACTATTGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCACCGGACCAG 243064 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || ||||| || ||||||| | | | | ||||||||| Sbjct 243063 CAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAAC 243004 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 || || || |||||||| | || || ||||| || Sbjct 243003 ATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAG 242969 >seq5 Length=37180910 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| ||||| || ||||| || || ||||| |||||| | || |||||||| ||| Sbjct 30312788 GACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAA 30312729 Query 24144 GATGACAGAA-ACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGT 24201 |||| | | || | || ||||||||||| ||||| |||||||| |||| || || | Sbjct 30312728 GATGGTCGCACACTT--GCTGATTATAACATACAAAAGGAATCTACCCTTCACTTGGTCT 30312671 Query 24202 TAAGATTGAGAGGAGGA 24218 | || ||||||||||| Sbjct 30312670 TGAGGCTGAGAGGAGGA 30312654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429922905627345